PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g103940.1 | ||||||||
Common Name | MTR_8g103940 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 499aa MW: 57359.3 Da PI: 9.5145 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.1 | 1.2e-16 | 39 | 130 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffk+ +s + + g l +p f+++++g+ s + l++++ ++Wev l +kk+g +++ kGW+eF+ ++ g +++F+++++s f ++ Medtr8g103940.1 39 FFKIV-TSTNIQDGTLKIPDAFTKKYSGD--LSNPMFLKTPDDKKWEVHL--TKKDGDIWIHKGWNEFATHYSIDHGHMLMFQYEKTSHF--KI 125 66666.99999***************888..6667***************..********************************998999..88 PP EEE-S CS B3 95 kvfrk 99 +f+k Medtr8g103940.1 126 YIFNK 130 88876 PP | |||||||
2 | B3 | 53.6 | 4.1e-17 | 243 | 331 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+v ++ ++ +++ +++p +f ++++++k++ ++l+ +gr+W+vk+ +++ ++GWk+F+ +n+Lk+gD+++F++++++ ++v Medtr8g103940.1 243 FTVVMT-YSYANKYMYIPVDFEQKYMKEKQS--VIVLQVlDNGRTWNVKH--WGRH----VSTGWKKFAFDNNLKVGDVCLFEMIKSNAYAFKV 327 555544.44455569*******999877655..4555554589*******..9987....677********************99877777788 PP EEE- CS B3 95 kvfr 98 +fr Medtr8g103940.1 328 LIFR 331 8887 PP | |||||||
3 | B3 | 44.8 | 2.3e-14 | 418 | 494 | 17 | 97 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++ ++f e++ ++k+++ + + + W v+l + + ++ l++GW++Fv++n+L++gD++vF+l+++++ + ++f Medtr8g103940.1 418 RIHNSFSEKYL----CHKKIVTLQFNKNLWHVRLASCPSEPSTKLSTGWSKFVEENKLEAGDVCVFELVNKEDLVFDAHIF 494 46666666663....667899999999*******88888888**************************9878876666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.75E-20 | 36 | 131 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.394 | 38 | 131 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.26E-15 | 38 | 129 | No hit | No description |
SMART | SM01019 | 3.8E-14 | 39 | 131 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.0E-15 | 39 | 130 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-21 | 39 | 131 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-22 | 235 | 331 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-22 | 237 | 332 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.775 | 241 | 333 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.70E-19 | 241 | 331 | No hit | No description |
SMART | SM01019 | 8.2E-13 | 242 | 333 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.7E-14 | 243 | 331 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-5 | 394 | 495 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.0E-18 | 397 | 495 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-17 | 399 | 497 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.17E-15 | 401 | 495 | No hit | No description |
Pfam | PF02362 | 9.3E-13 | 419 | 495 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.533 | 443 | 497 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence Send to blast |
MPPMHRKGDR SVSINTIHHN SEDLSMTCNP RNMHSFIRFF KIVTSTNIQD GTLKIPDAFT 60 KKYSGDLSNP MFLKTPDDKK WEVHLTKKDG DIWIHKGWNE FATHYSIDHG HMLMFQYEKT 120 SHFKIYIFNK STLEIEYHVD GNNQHEQNNL VENLDEKPTC KKTRPKSQIS SLQPHKKSRI 180 GASKDVGTSS KLKKNPKLVQ VKEESEDTTE CLNVNDQEPK NSTSKIAEAL NKAKNYKTNN 240 PFFTVVMTYS YANKYMYIPV DFEQKYMKEK QSVIVLQVLD NGRTWNVKHW GRHVSTGWKK 300 FAFDNNLKVG DVCLFEMIKS NAYAFKVLIF RLGEEHSLPP QVHGDGVNWV ETARIPGVEC 360 KTMSYKGKKA TQNSLHASSC SFKSSEVKKE SDQFASTLKN PHFTIKVISS HADVYKPRIH 420 NSFSEKYLCH KKIVTLQFNK NLWHVRLASC PSEPSTKLST GWSKFVEENK LEAGDVCVFE 480 LVNKEDLVFD AHIFRGCN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-16 | 229 | 334 | 35 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-16 | 229 | 334 | 35 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g103940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC145449 | 0.0 | AC145449.8 Medicago truncatula clone mth2-20m15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003592583.3 | 0.0 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | G7L911 | 0.0 | G7L911_MEDTR; Transcriptional factor B3 family protein | ||||
STRING | AET05311 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-47 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g103940.1 |
Entrez Gene | 11415772 |
Publications ? help Back to Top | |||
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