PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g102240.2
Common NameMTR_8g102240
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 485aa    MW: 54874.7 Da    PI: 7.1193
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g102240.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.79.3e-36471941128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee........vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 
                      lp+G++F+Ptd+el+ e+L++kve+k+++ ++        +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+        
  Medtr8g102240.2  47 LPAGVKFDPTDQELI-EHLEAKVESKNMQKSHplidefilTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqteecdl 138
                      799************.99*********66645566666544777757**********.555666799******************878888888 PP

              NAM  78 ....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                            + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Medtr8g102240.2 139 qgstGGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 194
                      877433778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.03E-3743213IPR003441NAC domain
PROSITE profilePS5100532.63247213IPR003441NAC domain
PfamPF023655.6E-1648194IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MMNNKMSNVS SSNLIDSKLE EHQLCGSKHC PRCGHKFDQG KPDWLGLPAG VKFDPTDQEL  60
IEHLEAKVES KNMQKSHPLI DEFILTIEGE DGICYTHPEK LPGVTRDGLS RHFFHRPSKA  120
YTTGTRKRRK IQTEECDLQG STGGETRWHK TGKTRPVMVN GKQKGCKKIL VLYTNFGKNR  180
KPEKTNWVMH QYHLGQHEEE KEGELVVSKI FYQTQPRQCN WSDNNQRIIS ATTTTGEGSG  240
GEPNYNINGR RDSGSGSSSS KEIVTQIHRD EMSAVVGVPS PLTSFTNALD IQHLKSDHFG  300
FIPFRKSYDE VGIGEGSTTR EMQASGGSCD QEVHERQHHV LAHHHQQQQQ QQHHQQQQQQ  360
HDHHVHQQIS ANAAFHISRP SNPISTIISP PPLHHTSTII LDDNSYHVST IMLQQNENFQ  420
QQQHHKLGGG RSASGLEEVI MGCTSTSSDI KEESSIRNQQ EAEWLKYSSY WPVDPHDNNH  480
HHHD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.212420.0flower| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g102240.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1624390.0AC162439.20 Medicago truncatula clone mth2-175g14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013447302.10.0NAC domain-containing protein 75 isoform X2
SwissprotQ9M0F81e-176NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A072TUY20.0A0A072TUY2_MEDTR; NAC transcription factor-like protein
STRINGAET051630.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-155NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]