PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr8g102240.2 | ||||||||
Common Name | MTR_8g102240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 485aa MW: 54874.7 Da PI: 7.1193 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 114.7 | 9.3e-36 | 47 | 194 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee........vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 lp+G++F+Ptd+el+ e+L++kve+k+++ ++ +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ Medtr8g102240.2 47 LPAGVKFDPTDQELI-EHLEAKVESKNMQKSHplidefilTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqteecdl 138 799************.99*********66645566666544777757**********.555666799******************878888888 PP NAM 78 ....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Medtr8g102240.2 139 qgstGGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 194 877433778************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.03E-37 | 43 | 213 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.632 | 47 | 213 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-16 | 48 | 194 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 485 aa Download sequence Send to blast |
MMNNKMSNVS SSNLIDSKLE EHQLCGSKHC PRCGHKFDQG KPDWLGLPAG VKFDPTDQEL 60 IEHLEAKVES KNMQKSHPLI DEFILTIEGE DGICYTHPEK LPGVTRDGLS RHFFHRPSKA 120 YTTGTRKRRK IQTEECDLQG STGGETRWHK TGKTRPVMVN GKQKGCKKIL VLYTNFGKNR 180 KPEKTNWVMH QYHLGQHEEE KEGELVVSKI FYQTQPRQCN WSDNNQRIIS ATTTTGEGSG 240 GEPNYNINGR RDSGSGSSSS KEIVTQIHRD EMSAVVGVPS PLTSFTNALD IQHLKSDHFG 300 FIPFRKSYDE VGIGEGSTTR EMQASGGSCD QEVHERQHHV LAHHHQQQQQ QQHHQQQQQQ 360 HDHHVHQQIS ANAAFHISRP SNPISTIISP PPLHHTSTII LDDNSYHVST IMLQQNENFQ 420 QQQHHKLGGG RSASGLEEVI MGCTSTSSDI KEESSIRNQQ EAEWLKYSSY WPVDPHDNNH 480 HHHD* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mtr.21242 | 0.0 | flower| root |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00460 | DAP | Transfer from AT4G29230 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr8g102240.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC162439 | 0.0 | AC162439.20 Medicago truncatula clone mth2-175g14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013447302.1 | 0.0 | NAC domain-containing protein 75 isoform X2 | ||||
Swissprot | Q9M0F8 | 1e-176 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A072TUY2 | 0.0 | A0A072TUY2_MEDTR; NAC transcription factor-like protein | ||||
STRING | AET05163 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-155 | NAC domain containing protein 75 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr8g102240.2 |
Entrez Gene | 11412192 |
Publications ? help Back to Top | |||
---|---|---|---|
|