PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g099350.1
Common NameMTR_8g099350
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 362aa    MW: 41263.5 Da    PI: 5.2474
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g099350.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.22e-29132192259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +DgynWrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs+edp++++itY+g+H+++
  Medtr8g099350.1 132 EDGYNWRKYGQKDILGTKHPRSYYRCTFRntqDCWATKQVQRSDEDPTIFDITYRGKHTCS 192
                      7**************************998889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-28125193IPR003657WRKY domain
PROSITE profilePS5081122.504126189IPR003657WRKY domain
SuperFamilySSF1182901.57E-25130193IPR003657WRKY domain
SMARTSM007742.8E-39131193IPR003657WRKY domain
PfamPF031062.3E-26132191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MENECNWEHN TLINELIQGM DVAKRLKEDL RTPYSLGTRD SQMQMILSSY EKALQILRCN  60
ESTSKSQPVT PVITSLPESP VSTNGSPLSE DFDGTFQDHQ EVKNKSKKRK VAPKWMDQIR  120
VSCDSSLEGP NEDGYNWRKY GQKDILGTKH PRSYYRCTFR NTQDCWATKQ VQRSDEDPTI  180
FDITYRGKHT CSQGNNAIEP YKSQEKQEKP HIHNNNIIHH AQQSQESFTK FSNTLTVKTD  240
NLGNEEMTCP FTFPSTSYGY TTQENHSWVP PALENDSFLS SLFQTHLLSP ATPESNYFSS  300
PSFNMNDFDG FYNNPRSESG ITEIISTNTS VTNSPIPDFH FPLDPVEIDP NFPFNTPGFF  360
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-18132191968OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.115301e-154leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g099350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013447178.10.0probable WRKY transcription factor 41
TrEMBLA0A072U5T40.0A0A072U5T4_MEDTR; Putative transcription factor WRKY family
STRINGGLYMA05G36970.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.14e-68WRKY family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]