PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g093580.1 | ||||||||
Common Name | MTR_8g093580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NAC | ||||||||
Protein Properties | Length: 490aa MW: 53787.5 Da PI: 3.9576 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 148 | 4.7e-46 | 6 | 134 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 l pGfrF+Pt el++++Lk+kv gkk++ +vi+e+diyk+ PwdLp+ +++++ ewyfF++ +kky++g r +rat+ g+Wkatg+d++v Medtr8g093580.1 6 LVPGFRFSPTGVELIKYFLKRKVLGKKFHN-DVIAELDIYKYAPWDLPElsYLQNGDLEWYFFCPIEKKYRSGPRMKRATEIGFWKATGQDRAV 98 579************************999.99**************94347777888************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + ++++vg+ ktL+f++g++p+g +tdWvmheyrle Medtr8g093580.1 99 QQ-NNQTVGMIKTLIFHTGKSPRGDRTDWVMHEYRLE 134 99.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-54 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.329 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-22 | 8 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MAIPKLVPGF RFSPTGVELI KYFLKRKVLG KKFHNDVIAE LDIYKYAPWD LPELSYLQNG 60 DLEWYFFCPI EKKYRSGPRM KRATEIGFWK ATGQDRAVQQ NNQTVGMIKT LIFHTGKSPR 120 GDRTDWVMHE YRLEDKDLAD KGTVQDSYVI CKVFQKEGPG PRNGAQYGRP FNEEDWSDDE 180 VGIPFAESAA LVPSLPVTSN SSVLNDQNLQ TSGYIGSISM PCQSELVPSP DPTNSCQTGL 240 TPSPDPANPC QTGFMPYPDP VNSCQTGGFM PSPNPANSCQ TGLTPSPDPS NSCQTGFMPY 300 PDPVNSYQTG FMPASDPANS CQTEFMPSPD HASSCQIGLM PLPDPANDSY PDNQAVNNDD 360 DDILAMLDIF KGNGVLPAPD PANDSYPDNQ AVNNDDDILA MLDIFEENGI LPEENIADGA 420 LLTDFFDGLE DVDCSAELGS DGQNADFSTY GLASTGNVVG HDDFDFMELI DLDSDTFWQT 480 QPESWSRNK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-40 | 6 | 157 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-40 | 6 | 157 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-40 | 6 | 157 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-40 | 6 | 157 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-40 | 6 | 157 | 17 | 166 | NAC domain-containing protein 19 |
4dul_B | 6e-40 | 6 | 157 | 17 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.13486 | 0.0 | leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269|PubMed:20388856}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g093580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC158209 | 0.0 | AC158209.13 Medicago truncatula clone mth2-154h5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012572255.2 | 1e-144 | NAC domain-containing protein 82-like | ||||
Swissprot | Q9FY82 | 7e-85 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | G7LE14 | 0.0 | G7LE14_MEDTR; Plant NAC domain protein | ||||
STRING | AET04736 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3302 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09330.4 | 3e-87 | NAC domain containing protein 82 |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g093580.1 |
Entrez Gene | 11427573 |
Publications ? help Back to Top | |||
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