PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g093580.1
Common NameMTR_8g093580
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 490aa    MW: 53787.5 Da    PI: 3.9576
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g093580.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1484.7e-4661341129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      l pGfrF+Pt  el++++Lk+kv gkk++  +vi+e+diyk+ PwdLp+   +++++ ewyfF++ +kky++g r +rat+ g+Wkatg+d++v
  Medtr8g093580.1   6 LVPGFRFSPTGVELIKYFLKRKVLGKKFHN-DVIAELDIYKYAPWDLPElsYLQNGDLEWYFFCPIEKKYRSGPRMKRATEIGFWKATGQDRAV 98 
                      579************************999.99**************94347777888************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       + ++++vg+ ktL+f++g++p+g +tdWvmheyrle
  Medtr8g093580.1  99 QQ-NNQTVGMIKTLIFHTGKSPRGDRTDWVMHEYRLE 134
                      99.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-543156IPR003441NAC domain
PROSITE profilePS5100552.3296156IPR003441NAC domain
PfamPF023651.6E-228133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MAIPKLVPGF RFSPTGVELI KYFLKRKVLG KKFHNDVIAE LDIYKYAPWD LPELSYLQNG  60
DLEWYFFCPI EKKYRSGPRM KRATEIGFWK ATGQDRAVQQ NNQTVGMIKT LIFHTGKSPR  120
GDRTDWVMHE YRLEDKDLAD KGTVQDSYVI CKVFQKEGPG PRNGAQYGRP FNEEDWSDDE  180
VGIPFAESAA LVPSLPVTSN SSVLNDQNLQ TSGYIGSISM PCQSELVPSP DPTNSCQTGL  240
TPSPDPANPC QTGFMPYPDP VNSCQTGGFM PSPNPANSCQ TGLTPSPDPS NSCQTGFMPY  300
PDPVNSYQTG FMPASDPANS CQTEFMPSPD HASSCQIGLM PLPDPANDSY PDNQAVNNDD  360
DDILAMLDIF KGNGVLPAPD PANDSYPDNQ AVNNDDDILA MLDIFEENGI LPEENIADGA  420
LLTDFFDGLE DVDCSAELGS DGQNADFSTY GLASTGNVVG HDDFDFMELI DLDSDTFWQT  480
QPESWSRNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-40615717166NO APICAL MERISTEM PROTEIN
1ut4_B6e-40615717166NO APICAL MERISTEM PROTEIN
1ut7_A6e-40615717166NO APICAL MERISTEM PROTEIN
1ut7_B6e-40615717166NO APICAL MERISTEM PROTEIN
4dul_A6e-40615717166NAC domain-containing protein 19
4dul_B6e-40615717166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.134860.0leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269|PubMed:20388856}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g093580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1582090.0AC158209.13 Medicago truncatula clone mth2-154h5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012572255.21e-144NAC domain-containing protein 82-like
SwissprotQ9FY827e-85NAC82_ARATH; NAC domain-containing protein 82
TrEMBLG7LE140.0G7LE14_MEDTR; Plant NAC domain protein
STRINGAET047360.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33023465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.43e-87NAC domain containing protein 82
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  4. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]