PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g087860.1
Common NameAGb, MTR_8g087860
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 28092.7 Da    PI: 9.7494
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g087860.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.52.6e-312574150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  Medtr8g087860.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 74
                     79***********************************************8 PP
2K-box107.81.2e-35941895100
            K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                        ks++e++ +++qqe+akL+ +i+nLq+ +R+++Ge+L++++ k+L++Le++Lek++++iRskKne+l++++e++qk+e el++ n+ Lr+k+
  Medtr8g087860.1  94 GAKSASESNVQYYQQEAAKLRVQISNLQNHNRQMMGESLSNMNGKDLRNLESKLEKGISRIRSKKNEMLFAELEYMQKREVELHNSNQVLRAKI 187
                      345599***************************************************************************************9 PP

            K-box  99 ee 100
                       e
  Medtr8g087860.1 188 SE 189
                      76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-401776IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.5151777IPR002100Transcription factor, MADS-box
CDDcd002658.29E-441892No hitNo description
SuperFamilySSF554551.83E-321889IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-331939IPR002100Transcription factor, MADS-box
PfamPF003192.0E-262673IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-333954IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-335475IPR002100Transcription factor, MADS-box
PfamPF014861.3E-2599187IPR002487Transcription factor, K-box
PROSITE profilePS5129714.786103193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSFPNESMPD SPQRAKIGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSTRGRL YEYANNSVKA SIERYKKACS DSSGAKSASE SNVQYYQQEA AKLRVQISNL  120
QNHNRQMMGE SLSNMNGKDL RNLESKLEKG ISRIRSKKNE MLFAELEYMQ KREVELHNSN  180
QVLRAKISES EQRSNHNVNV LPGGTSFECM QPQQQFDSRG YFQVNELQPN DQYARQDQMS  240
LQFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P9e-201785169Myocyte-specific enhancer factor 2B
1tqe_Q9e-201785169Myocyte-specific enhancer factor 2B
1tqe_R9e-201785169Myocyte-specific enhancer factor 2B
1tqe_S9e-201785169Myocyte-specific enhancer factor 2B
5f28_A9e-201785169MEF2C
5f28_B9e-201785169MEF2C
5f28_C9e-201785169MEF2C
5f28_D9e-201785169MEF2C
6c9l_A9e-201785169Myocyte-specific enhancer factor 2B
6c9l_B9e-201785169Myocyte-specific enhancer factor 2B
6c9l_C9e-201785169Myocyte-specific enhancer factor 2B
6c9l_D9e-201785169Myocyte-specific enhancer factor 2B
6c9l_E9e-201785169Myocyte-specific enhancer factor 2B
6c9l_F9e-201785169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g087860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1598050.0KF159805.1 Medicago truncatula cultivar Jemalong A17 MADS-box transcription factor AGAMOUSb (AGb) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003629877.10.0floral homeotic protein AGAMOUS isoform X1
SwissprotQ435851e-123AG_TOBAC; Floral homeotic protein AGAMOUS
TrEMBLG7L7Z61e-180G7L7Z6_MEDTR; AGAMOUSb
STRINGAET043530.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.17e-99MIKC_MADS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Serwatowska J, et al.
    Two euAGAMOUS genes control C-function in Medicago truncatula.
    PLoS ONE, 2014. 9(8): p. e103770
    [PMID:25105497]
  3. Cheung AY,Zhan XY,Wang H,Wu HM
    Organ-specific and Agamous-regulated expression and glycosylation of a pollen tube growth-promoting protein.
    Proc. Natl. Acad. Sci. U.S.A., 1996. 93(9): p. 3853-8
    [PMID:8632979]