PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr8g087540.1 | ||||||||
Common Name | MTR_8g087540 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 402aa MW: 45835 Da PI: 5.0635 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108 | 7.4e-34 | 13 | 104 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl k+ye+++d++ + ++sws++++sfvv+++ efa+ +Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+ weF+++ F +g+ +l++ Medtr8g087540.1 13 FLAKTYEMVDDRSSDPIVSWSASNKSFVVWNPPEFARVLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANDDFLRGQPHLMK 97 9********************999****************************************9998.........***************** PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 +i+r+k Medtr8g087540.1 98 NIHRRKP 104 ****985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.28E-35 | 8 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.1E-62 | 9 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.8E-37 | 10 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.5E-30 | 13 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.6E-19 | 13 | 36 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.6E-19 | 51 | 63 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 52 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.6E-19 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 402 aa Download sequence Send to blast |
MDEAGSSSSL PPFLAKTYEM VDDRSSDPIV SWSASNKSFV VWNPPEFARV LLPRFFKHNN 60 FSSFIRQLNT YGFRKVDPEQ WEFANDDFLR GQPHLMKNIH RRKPVHSHSL HNLQAQAPLT 120 ESERQSMVDE IEKLKQDREQ LLMETNRYQH DWETYEIQMH CSKDQLEKLE HKQQKMLSSV 180 SEALQKPMIA VNLLPLAEAM ERKRRLPARS GCFNNEASVE DAMETSVALP RENAEDNSTL 240 TLNTERLDQL EASVAFWETL AHEVGGNFVH THSNMDLDES TCCADSLSIS SQQLDGEVRP 300 KSPEIDMNVE PASAALEAVA LKEQPARITT AATGVNDVFW EQFLTEDPGA SEAQEVQSER 360 KDNSSRKNEG KPSDHGRFWW NMRKSNNHPE QMGHVSQVEK I* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 4e-23 | 4 | 102 | 20 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-23 | 4 | 102 | 20 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-23 | 4 | 102 | 20 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 200 | 205 | ERKRRL |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mtr.1982 | 0.0 | root| stem |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00443 | DAP | Transfer from AT4G18880 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr8g087540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT144463 | 0.0 | BT144463.1 Medicago truncatula clone JCVI-FLMt-19L8 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003629847.1 | 0.0 | heat stress transcription factor A-4c | ||||
Swissprot | O49403 | 1e-113 | HFA4A_ARATH; Heat stress transcription factor A-4a | ||||
TrEMBL | G7L7A0 | 0.0 | G7L7A0_MEDTR; Heat shock transcription factor A4A | ||||
STRING | AET04323 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3568 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18880.1 | 1e-116 | heat shock transcription factor A4A |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr8g087540.1 |
Entrez Gene | 11406165 |
Publications ? help Back to Top | |||
---|---|---|---|
|