PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g083100.1
Common NameMTR_8g083100
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HSF
Protein Properties Length: 488aa    MW: 54344.1 Da    PI: 4.8033
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g083100.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.72.4e-35231132101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d++++e++sws++++sf+v+++ ef++ +Lp+yFkh+nf+SF+RQLn+YgF+k + e+         weF++++F k++k+ll+
  Medtr8g083100.1  23 FLQKTYDMVDDSTTDEIVSWSSDNKSFIVWNPPEFSRVLLPTYFKHNNFSSFIRQLNTYGFRKADPER---------WEFANEEFIKDQKHLLK 107
                      9***************************************************************9998.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +i+r+k
  Medtr8g083100.1 108 NIHRRK 113
                      ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467857.21E-3519112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.4E-6019112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.9E-3819112IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-182346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.1E-3123112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-186173IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-187486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MNSAPQSSSA AAAGGSGGGP APFLQKTYDM VDDSTTDEIV SWSSDNKSFI VWNPPEFSRV  60
LLPTYFKHNN FSSFIRQLNT YGFRKADPER WEFANEEFIK DQKHLLKNIH RRKPIHSHSH  120
PPGSAVDPER AALEQEIEKL SREKNALQTK LLSYNYLDTE KLQLEDFQRR LDGMEKRQTN  180
LQNFFEKALQ DSFIVELLSR KIESMDLAAY NKKRRLPQVD QVQPVAEGSL VDNPSNFRLE  240
FGNVFPHDIS NKLRLELSPA VSDMNLISGS TQGSNEDEES LQKNLSEGEL TGMQTRTGLA  300
FTPETLDLAD TGASFTFNMD SCLSQRATTT ECPNLHSLEP STEEGDSHIS CQLNLTLASC  360
TLEFNRNSYS ARSPQINCQE IGNLAESRVN ADGKESEIGV SSNRNVANEA INLAPPKEAS  420
GNVQVKAAAR HGVNDVFWEN FLTERPGCSD NEEAISNYRA IPNSEQEEGR SVHGISSNIK  480
NMDNLTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-201011217129Heat shock factor protein 1
5d5v_B4e-201011217129Heat shock factor protein 1
5d5v_D4e-201011217129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.124480.0leaf| root| seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g083100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465850.0AC146585.18 Medicago truncatula clone mth2-68o3, complete sequence.
GenBankAY2241880.0AY224188.1 Medicago truncatula adenosylhomocysteinase (AHC1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003629611.10.0heat stress transcription factor A-5
SwissprotQ94BZ51e-144HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLG7LH280.0G7LH28_MEDTR; Heat shock transcription factor A8
STRINGAET040870.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-146HSF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]