PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g081010.1
Common NameMTR_8g081010
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 951aa    MW: 103432 Da    PI: 4.4081
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g081010.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000112042123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C++Cg +F++++   +H r H
  Medtr8g081010.1 20 YVCHKCGWPFPNPHPSAKHRRAH 42
                     9******************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.7252042IPR007087Zinc finger, C2H2
PROSITE patternPS0002802242IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 951 aa     Download sequence    Send to blast
MHHQDQTITH TPGNENHGVY VCHKCGWPFP NPHPSAKHRR AHKKICGTIE GYKEEPTNFN  60
GSDVDYKTPG LVELGSNNGG IERKFSRSES EVYSDAVDDF PDTGLSQGVK HNLQQEHTLN  120
SAADVSPLIA SSSNDCQIKN PKIMQSESFE VGNIGGTQGQ LSGSTVDPLT SSIADSKNEE  180
SSIVHGDGFS GLSSDSSLGI AEAVPNLLPE KNIYAGENVT DCSLVCDEKE LNLKGTDEVK  240
SEKDRVEIME STDNIVGETY EGTPKIVVNE AISLDHDMGN EAVNPKEKKG PGSLSLLPQY  300
EFPQEVNSSI ITNEAQVESA HAIHSTSNEV EVLPEKEDVN VNIDPLPVHD DKFDAAYPQS  360
VSLKHEEHVT EENNFHFNTS QLSERNGVLS SEMHVMDNDT KTENIHAEDC SEVSLVELTT  420
ETYQISHEIG VSTKTEMDEN DFPEEHEPDE IHENSQPESS LMVSANEFQR EASFRSATDE  480
TFSIISNDTT EINDASVVGK VVGENVVNDS EVIVKDFQPR SDHLQSEVEQ SSDLFRNNSD  540
DAGENGKIED LINSNIKLYE ENKKPTGIAA DLHEEQDEQL SVKAAEDFSR KHTSHSSTNA  600
VLSVEPDSAV EDDSIGEPVQ DQSHDNLVKL GSSGIDTSAD SHEAWDAQLL VKATEDLASK  660
YASHSSINSG ASAEHDSAVE DNSGGREVSR VTAVPLPVDD QSNNNLTKLT PPRTDVSVDS  720
GSRRDSLEGN WGSGSVISMI SDAPAVTDVE TLPSTGSLAS TEAGKSDLNV RQAAPAERQL  780
SGKSETFELP SFTTLVEPSH VASPKGTTSE TTNPQQSNST SPAGWFPTLN QVINESEAKK  840
KNEEKITKIT NRSRSKEHTP LKSLLGEATP RNKPKSPKIE ENNGSGLTTV NSILGPESPS  900
ETQVVKEKAA NEWNSPARYP ANIKREKKKL KSRPFWIQLV CCTTVDPQRR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g081010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013446614.10.0uncharacterized protein LOC25501782 isoform X1
TrEMBLA0A072TTW90.0A0A072TTW9_MEDTR; Putative transcription factor C2H2 family
STRINGGLYMA05G28290.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50511719
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]