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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g075130.1 | ||||||||
Common Name | MTR_8g075130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bZIP | ||||||||
Protein Properties | Length: 179aa MW: 20730.4 Da PI: 10.6575 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 39.1 | 1.6e-12 | 106 | 165 | 5 | 62 |
CHHHCHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKka...eieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 +r +r +kNRe+A rsR+RK++ +i eL++kvk+Le+eN +Lk + ++l ++++++k++ Medtr8g075130.1 106 RRHKRIMKNRESAARSRARKQEiiaYIFELKKKVKSLEEENARLK-RQQHLCDTASNHKQK 165 689******************6444899*****************.999999999999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 0.0011 | 102 | 169 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 4.52E-16 | 106 | 155 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 9.3E-11 | 106 | 160 | No hit | No description |
SuperFamily | SSF57959 | 8.84E-8 | 106 | 156 | No hit | No description |
Pfam | PF00170 | 3.1E-9 | 106 | 152 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 109 | 124 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MSHQPLQEQT PQQQQHHLRP NKPPKNTMED VWKDINLPSL TNHMSNTVSS PSLMTPSSLH 60 STINLNSLPE FHFDPLAHND LQLEQNHHHT TTLSKVEALL SNSIERRHKR IMKNRESAAR 120 SRARKQEIIA YIFELKKKVK SLEEENARLK RQQHLCDTAS NHKQKRKGNL YRTSTAPF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g075130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC136504 | 0.0 | AC136504.23 Medicago truncatula chromosome 8 clone mth2-13m6, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024629057.1 | 1e-110 | protein FD | ||||
TrEMBL | G7LB63 | 1e-127 | G7LB63_MEDTR; BZIP transcription factor | ||||
STRING | AET03736 | 1e-126 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16995 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 2e-15 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g075130.1 |
Entrez Gene | 11437627 |
Publications ? help Back to Top | |||
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