PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g070820.2
Common NameMTR_8g070820
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 372aa    MW: 40110.1 Da    PI: 6.5213
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g070820.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_167.32.6e-21279341163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L +eN +L+ el+++k e++k +se+
  Medtr8g070820.2 279 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLNQENASLRAELSRIKSEYEKIRSEN 341
                      89*********************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.9E-28198IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.5E-50137272No hitNo description
Gene3DG3DSA:1.20.5.1708.7E-17277339No hitNo description
SMARTSM003381.3E-20279343IPR004827Basic-leucine zipper domain
PfamPF001705.6E-20279341IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.415281344IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.81E-10282338No hitNo description
CDDcd147024.18E-24284334No hitNo description
PROSITE patternPS000360286301IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MSSNDVDKTI KEKEPKTPPA ATSQEQSSTT TGTPAVNPEW ANYQAYPSIP PPGFMASSPQ  60
AHPYMWGVQH MMPPYGTPPH PYVAMYPHGG IYAHPSMPPG SYPFSPYAMP SPNGMVDASG  120
NTPGSSEADG KPHEVKEKLP IKRSKGSLGS SNMVTRKNNE LGKTPGASAN GIHSKSGESA  180
SEGTSEGSDE NSQNGSQLKF GERQDSFEDD PSQNGSSVPQ NGALNTPHTV VNQTMSVVPM  240
SVAGPLTTVP GPTTNLNIGM DYWGTPTSST IPAMHGKDER ELKRQRRKQS NRESARRSRL  300
RKQAECDELA QRAEVLNQEN ASLRAELSRI KSEYEKIRSE NASLKERLGE IPRNEDLGEG  360
QNDQHVGEGT Q*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295301RRSRLRK
2295302RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.8600.0flower| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g070820.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1470380.0BT147038.1 Medicago truncatula clone JCVI-FLMt-21A15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013446234.10.0bZIP transcription factor 16 isoform X2
SwissprotQ501B21e-152BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A072TSU10.0A0A072TSU1_MEDTR; BZIP transcription factor family protein
STRINGGLYMA09G34170.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-138basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]