PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g064700.1
Common NameMTR_8g064700
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 420aa    MW: 47937.1 Da    PI: 6.6033
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g064700.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.1e-13247290755
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + Er+RR+ri++++++Lr+l+P+      +K++ ++iLe A+eYI +Lq
  Medtr8g064700.1 247 ITERNRRNRIKQGLFTLRSLVPNI-----TKMDRVAILEDAIEYIMELQ 290
                      68*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.6E-147144IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088814.583240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-16241304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.59E-12243293No hitNo description
SMARTSM003531.2E-14246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-16247304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-11247290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.82E-5352414No hitNo description
Gene3DG3DSA:3.30.70.2602.0E-5352414No hitNo description
CDDcd048737.42E-5354416No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MGVVEFLRPF VETKAWDYVV VWKYGNDPTR FIEWLGCCCC GGNIEKVKLK EEICEENNLA  60
SICRDTLFHH RVKTKTCEAL AKLPFTMSLY SSVHAEVAIS QQPRWLIHED SVGTQVLIPI  120
IGGLVELFTA KHIPEDINIM KFISAHCCVS IKQEAISAHS YANTNFNFSM EGHFGESNPS  180
TEHLTFDSNY GCLIPLEYLN QPLKSHKHNK IPVKRCSSSV DCGNGEENKE NIVKEPREKV  240
YHAKNLITER NRRNRIKQGL FTLRSLVPNI TKMDRVAILE DAIEYIMELQ RQETELQEEV  300
KALEVEDCEK DKELAEGTRN LPLIDLNQCS SDSTRKTQME LQVEVNHIAG KDFMIKLCCE  360
QKQGVFSRLM KAIDSYGLHV LSANMTTFDG KVLNILMVEA TAQDIHPKKL REYLMHQTR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g064700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445993.10.0transcription factor bHLH90
TrEMBLA0A072U2K10.0A0A072U2K1_MEDTR; BHLH transcription factor
STRINGXP_004509816.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122653033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.11e-68bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]