PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g063550.1
Common NameMTR_8g063550
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 445aa    MW: 48649.3 Da    PI: 4.1022
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g063550.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.53.9e-4761341129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      l pGfrF+Pt  el++++Lk+kv gkk+   +vi+e+diyk+ PwdLp  + +++++ ewyfF++ +kky +g+r nrat+ g+Wkatgkd++v
  Medtr8g063550.1   6 LVPGFRFSPTGVELIKYFLKRKVMGKKFLN-DVIAELDIYKYAPWDLPdlSYLQNGDLEWYFFCPIEKKYGNGSRMNRATEIGFWKATGKDRAV 98 
                      579************************877.99**************96447778888************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       + ++++vg+ ktL+f++g+ap+g +tdWvmheyrle
  Medtr8g063550.1  99 QQ-NNQTVGMIKTLIFHTGKAPRGDRTDWVMHEYRLE 134
                      99.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-563156IPR003441NAC domain
PROSITE profilePS5100553.5716156IPR003441NAC domain
PfamPF023653.9E-238133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MAIPKLVPGF RFSPTGVELI KYFLKRKVMG KKFLNDVIAE LDIYKYAPWD LPDLSYLQNG  60
DLEWYFFCPI EKKYGNGSRM NRATEIGFWK ATGKDRAVQQ NNQTVGMIKT LIFHTGKAPR  120
GDRTDWVMHE YRLEDKDLAD KGIVQDSYVI CKVFQKEGPG PRNGAQYGRP FNEEDWSDDE  180
VGTPFAEPAA LAPTLPVTSN SFVLNDQNLH AIGYNGSISM PCQSGLVPSP DPANSCQTGL  240
PPSPDPANSS QIGLTPSPDP VNSCQTGFMS SPDPSNACHI GFMSSPDPSN SCQTGYMPYP  300
DSANECQIGF MSPDPANSHQ TGLVLSPPDP VNSHLTGLVP SPDPVDNSYL ENQAVNTDNI  360
LSMLDMFNDN DILPEENIAE GALSTDFFDG LGDLDCLGPV GQNADFSTYG MASTGDDYLD  420
FMELIDLDSE MFWQSAAEPK LDPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-43615715169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.241120.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269|PubMed:20388856}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g063550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2541240.0AF254124.1 Medicago truncatula NAC1 (NAC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012572255.21e-147NAC domain-containing protein 82-like
SwissprotQ9FY827e-88NAC82_ARATH; NAC domain-containing protein 82
TrEMBLG7LG550.0G7LG55_MEDTR; Plant NAC domain protein
STRINGAET031690.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33023465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.43e-90NAC domain containing protein 82
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  4. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]