PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g063550.1 | ||||||||
Common Name | MTR_8g063550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NAC | ||||||||
Protein Properties | Length: 445aa MW: 48649.3 Da PI: 4.1022 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 151.5 | 3.9e-47 | 6 | 134 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 l pGfrF+Pt el++++Lk+kv gkk+ +vi+e+diyk+ PwdLp + +++++ ewyfF++ +kky +g+r nrat+ g+Wkatgkd++v Medtr8g063550.1 6 LVPGFRFSPTGVELIKYFLKRKVMGKKFLN-DVIAELDIYKYAPWDLPdlSYLQNGDLEWYFFCPIEKKYGNGSRMNRATEIGFWKATGKDRAV 98 579************************877.99**************96447778888************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + ++++vg+ ktL+f++g+ap+g +tdWvmheyrle Medtr8g063550.1 99 QQ-NNQTVGMIKTLIFHTGKAPRGDRTDWVMHEYRLE 134 99.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-56 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.571 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-23 | 8 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MAIPKLVPGF RFSPTGVELI KYFLKRKVMG KKFLNDVIAE LDIYKYAPWD LPDLSYLQNG 60 DLEWYFFCPI EKKYGNGSRM NRATEIGFWK ATGKDRAVQQ NNQTVGMIKT LIFHTGKAPR 120 GDRTDWVMHE YRLEDKDLAD KGIVQDSYVI CKVFQKEGPG PRNGAQYGRP FNEEDWSDDE 180 VGTPFAEPAA LAPTLPVTSN SFVLNDQNLH AIGYNGSISM PCQSGLVPSP DPANSCQTGL 240 PPSPDPANSS QIGLTPSPDP VNSCQTGFMS SPDPSNACHI GFMSSPDPSN SCQTGYMPYP 300 DSANECQIGF MSPDPANSHQ TGLVLSPPDP VNSHLTGLVP SPDPVDNSYL ENQAVNTDNI 360 LSMLDMFNDN DILPEENIAE GALSTDFFDG LGDLDCLGPV GQNADFSTYG MASTGDDYLD 420 FMELIDLDSE MFWQSAAEPK LDPK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-43 | 6 | 157 | 15 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.24112 | 0.0 | leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269|PubMed:20388856}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g063550.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF254124 | 0.0 | AF254124.1 Medicago truncatula NAC1 (NAC1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012572255.2 | 1e-147 | NAC domain-containing protein 82-like | ||||
Swissprot | Q9FY82 | 7e-88 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | G7LG55 | 0.0 | G7LG55_MEDTR; Plant NAC domain protein | ||||
STRING | AET03169 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3302 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09330.4 | 3e-90 | NAC domain containing protein 82 |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g063550.1 |
Entrez Gene | 11423684 |
Publications ? help Back to Top | |||
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