PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g062240.1
Common NameMTR_8g062240
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 279aa    MW: 29656.8 Da    PI: 8.2292
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g062240.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.4e-11161208455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Medtr8g062240.1 161 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 208
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.24E-11155212No hitNo description
SuperFamilySSF474599.68E-18155224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-18157226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-8161208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDPGAMMNEG SFPNGNGNTT PFSLAEIWQF PAAINGGGGG LGLRRPQFGN GLGQYGEFGP  60
GLNRDGNGLN HAGGGGKKRR DSEDDSAKCV STSNGGANAV NDSDGKRTKA SGNKNEGGDG  120
KVEGEASSGK HAEQSSKPPP SDPPKQDYIH VRARRGQATD SHSLAERARR EKISERMKIL  180
QDLVPGCNKV IGKALVLDEI INYIQSLQRQ VEFLSMKLEA VNSRLNTGIE AFPPKDYGQQ  240
TFDLAGMPFV SQATREPSRG SSPEWLHMQV GGGFERTT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.87080.0flower| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g062240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1407540.0BT140754.1 Medicago truncatula clone JCVI-FLMt-7G3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003628585.10.0transcription factor BHLH089
SwissprotQ84T081e-78BH089_ORYSJ; Transcription factor BHLH089
TrEMBLG7LEL60.0G7LEL6_MEDTR; Putative transcription factor bHLH family
STRINGAET030610.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.18e-90BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]