PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g036235.1
Common NameMTR_8g036235
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 392aa    MW: 43816.4 Da    PI: 7.5182
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g036235.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.62e-12328372654
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +++Er RR ri  ++ +L++l P+a    +k +s a++L +AveYIk+L
  Medtr8g036235.1 328 SIAERERRIRISARIKKLQDLFPNA----DKQNSTADMLDEAVEYIKDL 372
                      689*********************9....888***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.253322372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-13324386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.54E-11326377No hitNo description
Gene3DG3DSA:4.10.280.105.9E-13327383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9328372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-9328378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MSIVYTQAFN YSEGGSMKNT EMDSKFGYSQ TQQHCLQNNS GLTRYRSAPS SLLTSLVDRS  60
IGFFNEETFR NENHQQQHYS TSTSSEMETM FTNSESFSVK QEEKDPFSHG IQYNDYSYGS  120
QNQINYQTQH NQGFPNGSLG VEDNVFDGSS NNCSNLIRQK SSPAEFFSNY SVDSGLGCAN  180
GQATTSTSGL HGTLNFSSRT SSCSIKMPLI VENEHEVLQA NCIKSRNMGN DNCITKSYMP  240
SFTNDYWDSS TFSAPKNASN KGEFMFSTSN ALETQNVDFG YQKLGLTHHL SLPSSSSKMA  300
TMEKFLHLQG SVPCKIRAKR GFATHPRSIA ERERRIRISA RIKKLQDLFP NADKQNSTAD  360
MLDEAVEYIK DLRKQLKILT ETKAKCSCTS N*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.173900.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g036235.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445033.10.0transcription factor bHLH130
RefseqXP_024629575.10.0transcription factor bHLH130
TrEMBLA0A072TQD60.0A0A072TQD6_MEDTR; Putative transcription factor bHLH family
STRINGXP_004510971.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-32bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]