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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g032210.1 | ||||||||
Common Name | MTR_8g032210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 117aa MW: 12694.9 Da PI: 8.5327 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.9 | 9.6e-05 | 73 | 96 | 4 | 28 |
HHHHHHHHHHHHHHHHHHHHHCTSC CS HLH 4 ahnerErrRRdriNsafeeLrellP 28 +h+e+Er RR+riN +++Lr++ Medtr8g032210.1 73 NHSEAER-RRARINLHLDTLRSVFV 96 7999997.679**********9765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MTSPSPSRQS ALNPQEFASD RINDGCFQGV NGSGYGSSSS LVLDREKGEL VEAAVKLERK 60 GVSPGRSIEA LKNHSEAERR RARINLHLDT LRSVFVNQVS DSSSHNSVSS YHHSFH* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.15867 | 4e-97 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g032210.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC127018 | 1e-162 | AC127018.28 Medicago truncatula chromosome 8 clone mth2-8a13, complete sequence. | |||
GenBank | AC160333 | 1e-162 | AC160333.11 Medicago truncatula clone mth2-39p2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013465233.1 | 2e-35 | transcription factor bHLH30 | ||||
TrEMBL | G7LCM8 | 2e-78 | G7LCM8_MEDTR; Uncharacterized protein | ||||
STRING | AET02095 | 4e-79 | (Medicago truncatula) |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g032210.1 |
Entrez Gene | 11443416 |
Publications ? help Back to Top | |||
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