PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g027860.1
Common NameMTR_8g027860
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 349aa    MW: 38922.2 Da    PI: 4.9577
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g027860.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.72e-27135196159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK++ g++fpr+YYrCt++   gC ++k+v++s+ed+ ++eitY+g+H+++
  Medtr8g027860.1 135 VEDGHSWRKYGQKDILGAKFPRGYYRCTHRhaqGCLATKQVQKSDEDEMICEITYKGRHTCT 196
                      58***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-26125197IPR003657WRKY domain
PROSITE profilePS5081121.287130193IPR003657WRKY domain
SuperFamilySSF1182909.02E-24134197IPR003657WRKY domain
SMARTSM007741.4E-38135197IPR003657WRKY domain
PfamPF031065.2E-25136195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MKESIKCEEI GLIGELIQGE ELAKKLYDQI FSPSSPSSST SSSSSSSTST SSHQVLIDKL  60
ILSIETAITM AKGNEGKIKT NNVNMMDSHC SNGSPKSEVQ DSKFKHKHVS KKRKTVPKWT  120
EQVKVYSGTA AEGSVEDGHS WRKYGQKDIL GAKFPRGYYR CTHRHAQGCL ATKQVQKSDE  180
DEMICEITYK GRHTCTQSNK ALPSKTKLKF GQNKSQLNQK IQPQEEKIQS PLENNFSIDD  240
KEDIFQSFNF SSPSIGSENE DNNIFLETMI ENNFMENEDN NIFSDSNIFC LSSLLDLDST  300
GLGPSESNIT EIISGPNSIA NSPMDFDLYN DINFDMDDFS INTQELCY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-181401932174Disease resistance protein RRS1
5w3x_D6e-181401932174Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.89540.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g027860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1482760.0BT148276.1 Medicago truncatula clone JCVI-FLMt-14K1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444664.10.0probable WRKY transcription factor 53
TrEMBLA0A072TMF10.0A0A072TMF1_MEDTR; Putative transcription factor WRKY family
STRINGXP_004516403.11e-158(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.12e-37WRKY DNA-binding protein 30
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]