PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g024770.1
Common NameMTR_8g024770
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 455aa    MW: 51147.1 Da    PI: 8.5474
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g024770.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.5e-14278324354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h e+Er+RR+++N++f  Lr+++P+       K++Ka+ L  Av+YI++L
  Medtr8g024770.1 278 MNHVEAERQRREKLNHRFYALRSVVPNV-----SKMDKASLLSDAVDYINEL 324
                      5899***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-102371IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142152.4E-2770168IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474595.89E-18274334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.012275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-14278329No hitNo description
PfamPF000102.3E-11279324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-17279336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-17281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MKDFIISPSS SSHENPSSQT PTLQQKLQFL LQIQSENWIY GILWQTTKDE KGKPFLSWGE  60
GYFQGTKETT TSNKDAEWFY VMSLTRKFSI GNASSISLPG KAFALDSVLW LNSKHELQIY  120
NCERSNEAHM HGIETLICIP TTNGVIEMGS YDNIQQNWNL VHQAKSMFQT SSSESNSNLD  180
LTSTTPFDKC KTFIQNTSFA NMGVVSGGSA REDPHEKPKN LQEKHKNVSS CSLDSEDSDS  240
EYCPLLATKT TTAKNDSFEK REPKKRGRKP LTGTQTPMNH VEAERQRREK LNHRFYALRS  300
VVPNVSKMDK ASLLSDAVDY INELKAKIED LKLGQQKESK KAMMKTMKIV DNNSATTTSI  360
VVDQNKPSCS KNLIALEIDV KIIGHDAMVR VQSLNVNHPS ARLMSVLKDL EYQVHQASIS  420
TVNKVVMVQD VIVKVPNEMR NEESLIRSAI LMKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-25161682192Transcription factor MYC3
4rqw_B1e-25161682192Transcription factor MYC3
4rs9_A1e-25161682192Transcription factor MYC3
4yz6_A1e-25161682192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g024770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444574.10.0transcription factor MYC2
TrEMBLA0A072TM630.0A0A072TM63_MEDTR; Basic helix loop helix (BHLH) family transcription factor
STRINGXP_004510627.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.19e-42bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]