PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g023930.1
Common NameMTR_8g023930
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 474aa    MW: 55551.4 Da    PI: 7.2224
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g023930.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM138.83.3e-43241521127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp+GfrF+Pt+eelv++yLk+k+ g+  ++++vi+evd++++ePw+Lp +  +k++++ew+f ++ + kya++kr +r+t++g+Wkatg+d+++
  Medtr8g023930.1  24 LPVGFRFRPTNEELVNHYLKNKLLGNVSHVNNVIAEVDVCRFEPWELPsRsVIKSDDQEWFFLCPIEYKYAKSKRFKRTTNNGFWKATGNDRSI 117
                      79****************************99***************96347888999************************************ PP

              NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                      + + +++ +g+kktLv++ ++   g+kt+W++hey+
  Medtr8g023930.1 118 KIRgTNKIIGTKKTLVYH-EDPVPGVKTNWIIHEYH 152
                      *9966777**********.577888**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-4716171IPR003441NAC domain
PROSITE profilePS5100547.86424171IPR003441NAC domain
PfamPF023653.5E-2325152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MQTYQHIHHS LSLSLSLSLI LDFLPVGFRF RPTNEELVNH YLKNKLLGNV SHVNNVIAEV  60
DVCRFEPWEL PSRSVIKSDD QEWFFLCPIE YKYAKSKRFK RTTNNGFWKA TGNDRSIKIR  120
GTNKIIGTKK TLVYHEDPVP GVKTNWIIHE YHDAIFDDHQ RTFVLCRLMK KAEKNTEEEL  180
DTMICDVGES SRHMSSHYEN QETLEGISNV SSTMPKIRME SIFEEPYQAD KYFPFSTQQS  240
SIYENEREVY FSNSQFQGDY FRNEDMVIQS PFETNEEENN FINSMIVDGA PTRQGKVYAI  300
GLIKIYILLS LMVCLFQLME EGKIIFKLPY LHSTFSKTTS KDGSNSYLYA SDQTLLDKLT  360
STKFGYFINN KNLTFTLLKH LKTTPMEVTN FNSLASFLFQ LQLIPSLLID MKNTHCEAAV  420
VVFIPKTRVV MNWTLRRRLK KQRETAERDG DGVDYHKRWC WSYLWIWDQW LEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-322415215139Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g023930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1558831e-148AC155883.2 Medicago truncatula chromosome 2 clone mte1-80o18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444518.11e-149NAC domain-containing protein 59
TrEMBLA0A072TYB60.0A0A072TYB6_MEDTR; NAC transcription factor-like protein
STRINGAES844691e-148(Medicago truncatula)
STRINGAES846291e-148(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.13e-49NAC domain containing protein 69
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]