PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g023880.1 | ||||||||
Common Name | MTR_087s0031, MTR_8g023880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NAC | ||||||||
Protein Properties | Length: 270aa MW: 30475.3 Da PI: 5.6437 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 131.8 | 4.9e-41 | 7 | 147 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyat..gkrknra............t 78 +p G+rF+Ptdeelv++yL++k+ g++ +++vi++vd + + PwdLp +kvk+++kew+fF++ d ++t ++r nr+ t Medtr8g023880.1 7 MPIGYRFRPTDEELVSHYLNHKLLGNDAIVNNVIADVDFLGSAPWDLPalSKVKSDDKEWFFFTCLDPMKSTksKTRFNRKtnikpetetktkT 100 699************************999899***************5449999*********999877752256778867999999999999 PP NAM 79 ksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 k+gyWk tgkd+e+++k ++ ++g+kktLvfy g++++ kt+Wvmhey+ Medtr8g023880.1 101 KDGYWKITGKDREIKTKgTNIVIGIKKTLVFY-GNQHE--KTNWVMHEYH 147 9***************9566679*********.66655..9********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.1E-43 | 5 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.767 | 7 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.5E-26 | 8 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
METSTSMPIG YRFRPTDEEL VSHYLNHKLL GNDAIVNNVI ADVDFLGSAP WDLPALSKVK 60 SDDKEWFFFT CLDPMKSTKS KTRFNRKTNI KPETETKTKT KDGYWKITGK DREIKTKGTN 120 IVIGIKKTLV FYGNQHEKTN WVMHEYHSFP DNKENIVLCR LMKKIEKETK GLTHSSSHAA 180 ASIFGNIATM DSIQYACASP PRLDMEYFFP ETPIEEECSI KSLLKPTSLE NENGIGHDQP 240 EAFEEDSADD SSFVDSILND GVSISKETS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-26 | 3 | 164 | 13 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-26 | 3 | 164 | 13 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-26 | 3 | 164 | 13 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-26 | 3 | 164 | 13 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-26 | 3 | 164 | 16 | 168 | NAC domain-containing protein 19 |
3swm_B | 3e-26 | 3 | 164 | 16 | 168 | NAC domain-containing protein 19 |
3swm_C | 3e-26 | 3 | 164 | 16 | 168 | NAC domain-containing protein 19 |
3swm_D | 3e-26 | 3 | 164 | 16 | 168 | NAC domain-containing protein 19 |
3swp_A | 3e-26 | 3 | 164 | 16 | 168 | NAC domain-containing protein 19 |
3swp_B | 3e-26 | 3 | 164 | 16 | 168 | NAC domain-containing protein 19 |
3swp_C | 3e-26 | 3 | 164 | 16 | 168 | NAC domain-containing protein 19 |
3swp_D | 3e-26 | 3 | 164 | 16 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-26 | 3 | 164 | 13 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-26 | 3 | 164 | 13 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g023880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024628616.1 | 1e-161 | protein NTM1-like 9 | ||||
TrEMBL | G7ZZI9 | 0.0 | G7ZZI9_MEDTR; NAC transcription factor-like protein | ||||
STRING | AES84627 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2065 | 25 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 5e-39 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g023880.1 |
Entrez Gene | 25500586 |
Publications ? help Back to Top | |||
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