PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g023840.1
Common NameMTR_082s0016, MTR_087s0024, MTR_8g023840
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 401aa    MW: 45950.3 Da    PI: 5.4697
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g023840.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM149.51.6e-46111401128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      +p+GfrF+Ptdeelv++yLkkk+ g++  +++vi+evd++k+ePwdLp+   +k+++ ew+fF++rd kya++kr nr t+ gyWkatg d+++
  Medtr8g023840.1  11 VPVGFRFRPTDEELVNHYLKKKLLGNDSIVNNVIAEVDVCKFEPWDLPAcsLIKSNDPEWFFFCPRDYKYANSKRFNRRTQCGYWKATGLDRKI 104
                      599************************989899***************5347778888************************************ PP

              NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ +++++g+kktLvfy+g  p g+k++Wv+hey+ 
  Medtr8g023840.1 105 KVRgTDNVIGIKKTLVFYNGCVP-GVKSNWVIHEYHS 140
                      *9967788**********88776.59*********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-507158IPR003441NAC domain
PROSITE profilePS5100551.19511158IPR003441NAC domain
PfamPF023651.5E-2612139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MTNSFPHNYD VPVGFRFRPT DEELVNHYLK KKLLGNDSIV NNVIAEVDVC KFEPWDLPAC  60
SLIKSNDPEW FFFCPRDYKY ANSKRFNRRT QCGYWKATGL DRKIKVRGTD NVIGIKKTLV  120
FYNGCVPGVK SNWVIHEYHS ATFHDNQRTF VLCRLMKKAE KKAEEEIDRM ICDEGEPSRH  180
MSSDHENQET VEGIPDVISG TLLEKNMEPM FQEPHQAENY FPFSTYQPSI SENENEVSLS  240
NSGFYDSESG HIDMQSPFET IEEENQFINS MLNDGYFVNS EKIRHTFVNF PVQSKSLRMI  300
DYGSSDTDAE LVSKPCRNVL DTSTAFLEHP SSSEYYASFR NDFGGLEASS CDSSADKPLE  360
MINCFEISSA PSTLRRNKNQ YHPRPATFMS KRAASRISQT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-381015814168Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g023840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444514.10.0NAC domain-containing protein 69
TrEMBLG7ZZI30.0G7ZZI3_MEDTR; NAC transcription factor-like protein
STRINGAES844720.0(Medicago truncatula)
STRINGAES846210.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.37e-56NAC transcription factor-like 9
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]