PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g020510.1 | ||||||||
Common Name | MTR_8g020510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | AP2 | ||||||||
Protein Properties | Length: 575aa MW: 63973.8 Da PI: 6.795 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.7 | 5.3e-12 | 250 | 306 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + ++ ++ k + g ++ +e+Aaka++ a++k++g Medtr8g020510.1 250 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAAKAYDLAALKYWG 306 78*******************433.44555535555.779999**************98 PP | |||||||
2 | AP2 | 48.1 | 2.9e-15 | 349 | 400 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Medtr8g020510.1 349 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 400 78****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.58E-18 | 250 | 316 | No hit | No description |
Pfam | PF00847 | 6.1E-9 | 250 | 306 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-14 | 250 | 316 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-12 | 251 | 315 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.108 | 251 | 314 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-22 | 251 | 320 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-6 | 252 | 263 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.27E-25 | 349 | 410 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-18 | 349 | 410 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.8E-10 | 349 | 400 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-18 | 350 | 408 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-34 | 350 | 414 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.006 | 350 | 408 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-6 | 390 | 410 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 575 aa Download sequence Send to blast |
MSNWLGFSLT PHLRIDEEFG TENQNQNQNH VAEGSEIGRN YVTPSSHPHP HHLSIMPLRS 60 DGSLCVSDSF TPQEWRYENA ITDGNSNEEG PKLEDFLGCY SNQNQNSTTT STMSKINVNV 120 SPSFCTNNNP EIDTRENLTN QSLIHSFHAY NDHSNNNHHA LIHDNSMYKS WMTQTQFSSE 180 GKTTSSDGNG FQSLNLTMSP CVQNGVGGGV GSAISNVQVN EDPRKRSLSK SNAREPVPRK 240 SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCRKEGQTR KGRQGGYDKE EKAAKAYDLA 300 ALKYWGPTTH INFPLSTYDK ELEEMKHMTR QEFVANLRRK SSGFSRGASV YRGVTRHHQH 360 GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG TSAVTNFDIS RYDVKRICSS 420 STLITGDLAK RSPKDSTPPA TTAEDFNSCG SSSTLSQPPP LTITDGEQHS DELSNMVWNS 480 NNDEQKPQNG TNITESSQHG SPSNKNEMNP QSPKCSLGLP NEFGVSGADY GHGYFTLHGP 540 KFDDGSNEND HMNNNRLGNL GLVNQVPMFA LWNE* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g020510.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC144645 | 0.0 | AC144645.17 Medicago truncatula chromosome 8 clone mth2-11e15, complete sequence. | |||
GenBank | AC183304 | 0.0 | AC183304.14 Medicago truncatula chromosome 8 clone mth2-68f12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024629696.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q1PFE1 | 1e-131 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | G7L6T8 | 0.0 | G7L6T8_MEDTR; AP2 domain transcription factor | ||||
STRING | AET01742 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10274 | 31 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-113 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g020510.1 |
Entrez Gene | 11419919 |
Publications ? help Back to Top | |||
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