PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g020510.1
Common NameMTR_8g020510
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family AP2
Protein Properties Length: 575aa    MW: 63973.8 Da    PI: 6.795
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g020510.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.75.3e-12250306155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aaka++ a++k++g
  Medtr8g020510.1 250 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAAKAYDLAALKYWG 306
                      78*******************433.44555535555.779999**************98 PP
2AP248.12.9e-15349400155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Medtr8g020510.1 349 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 400
                      78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.58E-18250316No hitNo description
PfamPF008476.1E-9250306IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-14250316IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-12251315IPR001471AP2/ERF domain
PROSITE profilePS5103217.108251314IPR001471AP2/ERF domain
SMARTSM003801.3E-22251320IPR001471AP2/ERF domain
PRINTSPR003671.3E-6252263IPR001471AP2/ERF domain
CDDcd000182.27E-25349410No hitNo description
SuperFamilySSF541719.15E-18349410IPR016177DNA-binding domain
PfamPF008475.8E-10349400IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-18350408IPR001471AP2/ERF domain
SMARTSM003803.6E-34350414IPR001471AP2/ERF domain
PROSITE profilePS5103219.006350408IPR001471AP2/ERF domain
PRINTSPR003671.3E-6390410IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MSNWLGFSLT PHLRIDEEFG TENQNQNQNH VAEGSEIGRN YVTPSSHPHP HHLSIMPLRS  60
DGSLCVSDSF TPQEWRYENA ITDGNSNEEG PKLEDFLGCY SNQNQNSTTT STMSKINVNV  120
SPSFCTNNNP EIDTRENLTN QSLIHSFHAY NDHSNNNHHA LIHDNSMYKS WMTQTQFSSE  180
GKTTSSDGNG FQSLNLTMSP CVQNGVGGGV GSAISNVQVN EDPRKRSLSK SNAREPVPRK  240
SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCRKEGQTR KGRQGGYDKE EKAAKAYDLA  300
ALKYWGPTTH INFPLSTYDK ELEEMKHMTR QEFVANLRRK SSGFSRGASV YRGVTRHHQH  360
GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG TSAVTNFDIS RYDVKRICSS  420
STLITGDLAK RSPKDSTPPA TTAEDFNSCG SSSTLSQPPP LTITDGEQHS DELSNMVWNS  480
NNDEQKPQNG TNITESSQHG SPSNKNEMNP QSPKCSLGLP NEFGVSGADY GHGYFTLHGP  540
KFDDGSNEND HMNNNRLGNL GLVNQVPMFA LWNE*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g020510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1446450.0AC144645.17 Medicago truncatula chromosome 8 clone mth2-11e15, complete sequence.
GenBankAC1833040.0AC183304.14 Medicago truncatula chromosome 8 clone mth2-68f12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024629696.10.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-131AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLG7L6T80.0G7L6T8_MEDTR; AP2 domain transcription factor
STRINGAET017420.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-113AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]