PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr8g017210.1

Common Name

MTR_8g017210

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

C2H2

Protein Properties

Length: 518aa MW: 57283.8 Da PI: 8.869

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr8g017210.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	91	113	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Medtr8g017210.1 91 FICEICNKGFQRDQNLQLHRRGH 113 89*******************88 PP
2	zf-C2H2	12.7	0.00039	167	189	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Medtr8g017210.1 167 WKCEKCSKKYAVQSDWKAHSKTC 189 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.6E-5	90	113	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.29E-7	90	113	No hit	No description
PROSITE profile	PS50157	10.845	91	113	IPR007087	Zinc finger, C2H2
Pfam	PF12171	6.2E-5	91	113	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.022	91	113	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	93	113	IPR007087	Zinc finger, C2H2
SMART	SM00355	82	132	162	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.3E-4	155	188	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.29E-7	162	187	No hit	No description
SMART	SM00355	140	167	187	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence Send to blast
MVKGLMMFQQ QQVVEENMSN LTSASGEASV SSGNRTEIGT SSSYPQVQQQ YLVPPTQSQP 60 MKKKRNLPGN PDPDAEVIAM SPKSLLAKNR FICEICNKGF QRDQNLQLHR RGHNLPWKLK 120 QRTSKEIRKK VYVCPEPTCV HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS 180 DWKAHSKTCG TREYRCDCGT LFSRRDSFIT HRAFCDALAE ESARAMTNNA MPILPSQQQL 240 SSSSSHHHHM INLQNQFNNP QQDLHNFPLL KKEQHNQSFN LSEIPPWLGP HNVDNLSSSS 300 SIFSQHHHHQ ENPNPSLVHV SGPTLPSYQT VPSAHMSATA LLQKAAQMGA TMNRSGSASS 360 PAMNIKTHQV DSLNNVSGNF GLNLLSSSQE QQQHQQNTQE TNTTSTYLNN IHDVMFSSSS 420 SPSGFEATHF DEMFGGIMNS KKDQNLHHET SLSKKPTSTA EDGGGGGGGG GGNEGLTRDF 480 LGLRPLSHSD ILSIAGIGNC MNDQQQQNQS QKPSWQG*

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence Send to blast

MVKGLMMFQQ QQVVEENMSN LTSASGEASV SSGNRTEIGT SSSYPQVQQQ YLVPPTQSQP  60
MKKKRNLPGN PDPDAEVIAM SPKSLLAKNR FICEICNKGF QRDQNLQLHR RGHNLPWKLK  120
QRTSKEIRKK VYVCPEPTCV HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS  180
DWKAHSKTCG TREYRCDCGT LFSRRDSFIT HRAFCDALAE ESARAMTNNA MPILPSQQQL  240
SSSSSHHHHM INLQNQFNNP QQDLHNFPLL KKEQHNQSFN LSEIPPWLGP HNVDNLSSSS  300
SIFSQHHHHQ ENPNPSLVHV SGPTLPSYQT VPSAHMSATA LLQKAAQMGA TMNRSGSASS  360
PAMNIKTHQV DSLNNVSGNF GLNLLSSSQE QQQHQQNTQE TNTTSTYLNN IHDVMFSSSS  420
SPSGFEATHF DEMFGGIMNS KKDQNLHHET SLSKKPTSTA EDGGGGGGGG GGNEGLTRDF  480
LGLRPLSHSD ILSIAGIGNC MNDQQQQNQS QKPSWQG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-35	163	229	3	71	Zinc finger protein JACKDAW
5b3h_F	1e-35	163	229	3	71	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	129	KLKQRTSKEIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr8g017210.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC140915	0.0	AC140915.6 Medicago truncatula chromosome 8 clone mth2-10l24 map 9.500cM, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003627109.1	0.0	protein indeterminate-domain 7
Swissprot	Q8H1F5	1e-130	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	G7LHG9	0.0	G7LHG9_MEDTR; C2H2-like zinc finger protein, putative
STRING	AET01585	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-112	indeterminate(ID)-domain 7

Link Out ? help Back to Top
Phytozome	Medtr8g017210.1
Entrez Gene	11429447

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]