PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr8g015250.1 | ||||||||
Common Name | MTR_8g015250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 182aa MW: 21103.5 Da PI: 6.0238 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 47.2 | 4.7e-15 | 74 | 123 | 5 | 54 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 ++ rr+++NRe+ArrsR RK++ ++eL v +L +eN+ L ++l++ ++ Medtr8g015250.1 74 RKHRRMISNRESARRSRMRKQKHLDELWSQVMKLRTENHNLVDKLNHVSE 123 688***************************************99999876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.5E-15 | 70 | 134 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.875 | 72 | 135 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.9E-12 | 74 | 146 | No hit | No description |
Pfam | PF00170 | 9.3E-13 | 74 | 124 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.88E-13 | 74 | 124 | No hit | No description |
CDD | cd14702 | 3.57E-20 | 75 | 126 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 77 | 92 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 182 aa Download sequence Send to blast |
MVPSEIRGVN YLTPPENSFQ VQPNFVLPQN EIPNYHINNL LGSLPNFHYP SCLSSNSTTS 60 DEADELQFNI IDERKHRRMI SNRESARRSR MRKQKHLDEL WSQVMKLRTE NHNLVDKLNH 120 VSESHDTVVQ ENARLKEETF DLRQMVADMQ IGNSFPCNME DLCEIPCNTS QHKDDSSKIH 180 D* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 86 | 93 | RRSRMRKQ |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mtr.18231 | 1e-158 | flower| root |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr8g015250.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013444229.1 | 1e-133 | basic leucine zipper 43 | ||||
Swissprot | Q9FMC2 | 2e-38 | BZP43_ARATH; Basic leucine zipper 43 | ||||
TrEMBL | A0A072TM08 | 1e-132 | A0A072TM08_MEDTR; BZIP transcription factor | ||||
STRING | XP_004490322.1 | 6e-93 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1604 | 33 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G30530.1 | 3e-52 | basic leucine-zipper 42 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr8g015250.1 |
Entrez Gene | 25500370 |
Publications ? help Back to Top | |||
---|---|---|---|
|