PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g009020.1
Common NameMTR_8g009020
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 333aa    MW: 37782.9 Da    PI: 7.7608
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g009020.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.3e-12143189455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h ++Er+RR+ + ++f  L   +P +     kK +Ka iLe+A++Y+k+Lq
  Medtr8g009020.1 143 DHIMAERKRRQVLSERFIALSATIPGL-----KKTDKAYILEEAINYVKQLQ 189
                      699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.335139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-15143200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.46E-9144192No hitNo description
SuperFamilySSF474592.49E-16144203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9144189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-12145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGGDKSPSLD EDKFQLKNMQ QSCFSFEGDN SISQSSTIQY INNNIFDNVC VIPTIQENIL  60
KSSNSSNSLI SQEYNCPTNS QQIAPSQYIL SFENSIMKPS PNSATFSSIM VPKTTLNNNI  120
VSELPKTIKK RTKNLRSSSE IQDHIMAERK RRQVLSERFI ALSATIPGLK KTDKAYILEE  180
AINYVKQLQE RVNELENHTK RKRDSIIFIK KSQPCIVDKE KSTSCEENSD NDDHRYYSKK  240
EVPRVEARVI DKEILIGIHC EKQKNIVVRL MALLQNLHLS LASSSVLPFG SSTLKVTIIA  300
QMDDEYCMSM NDLVNNLRQN LMESRDNNDN IS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147152ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g009020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1249660.0AC124966.33 Medicago truncatula chromosome 8 clone mth2-8i15, complete sequence.
GenBankAC1828170.0AC182817.35 Medicago truncatula chromosome 8 clone mth2-179d15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027187108.11e-133transcription factor bHLH18-like isoform X1
TrEMBLA0A396GEP70.0A0A396GEP7_MEDTR; Putative transcription factor bHLH family
STRINGAET012580.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14989811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-46bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]