PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g009010.1
Common NameMTR_8g009010
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 321aa    MW: 36924.9 Da    PI: 9.5074
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g009010.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.4e-10134180455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h ++Er+RR+ + ++f  L   +P +     kK  K+ iL++A++Y+k+Lq
  Medtr8g009010.1 134 DHIMAERKRRQVLTERFIALSATIPGL-----KKTGKVYILQEAINYVKQLQ 180
                      699***********************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.173130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-8134180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-16134196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.25E-8135184No hitNo description
SuperFamilySSF474599.55E-16135196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-10136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGYDKSHFYL DEDKFQREIV QHQPSFSFES GNSQSSTIQY MNNIVDNVCV TNTVHENIAQ  60
EYTWATNSQQ LPPSQYILSF ENSTMQPSPN SDIATCSSIM VQETTTLNNN VSSELPKIIK  120
KRTKNLRSSC EMQDHIMAER KRRQVLTERF IALSATIPGL KKTGKVYILQ EAINYVKQLQ  180
ERVKKLEKEV PRVEARVIDK EILIGIHCEK QKDIVVRLMA LLQNLHLSVA SRSSVLPFGS  240
STLKVTIIAQ MDDEFCMSIN DLIKVLRNIS WSHVRIKRIF LNQLLFMSAL KLVENFVWWV  300
FVCLQRKILP KKQSKGEIIL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138143ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g009010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1249660.0AC124966.33 Medicago truncatula chromosome 8 clone mth2-8i15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024628094.10.0transcription factor bHLH18
TrEMBLG7LCK60.0G7LCK6_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAET012570.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14989811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22770.12e-34bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]