PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g006825.1 | ||||||||
Common Name | MTR_8g006825 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 23706.8 Da PI: 10.0879 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.8 | 1.1e-17 | 95 | 145 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp++ng +r++lg++ t+eeA a+++a k++g Medtr8g006825.1 95 RYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYETEEEAGLAYDRATFKIRG 145 8********.***********9998..*********************999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.77E-32 | 94 | 155 | No hit | No description |
SuperFamily | SSF54171 | 2.09E-22 | 95 | 154 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-30 | 95 | 154 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.9E-13 | 95 | 145 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-35 | 95 | 159 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.052 | 95 | 153 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-12 | 96 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-12 | 135 | 155 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MDASILMSCD FNPSFESVDQ IQHHLFDLDK HQNDFHSLIM NTNSTHHASD PSSHDSFTSP 60 TLVVNNTDNV NDAACKNGSS SMIHKPHIPI PEWKRYRGVR RRPWGKFAAE IRDPKKNGAR 120 VWLGTYETEE EAGLAYDRAT FKIRGRKAKL NFPHLIGSKE PTNVVVASKN SLSEANYEPS 180 GGIIKKKKKN LVDVLNRLAN NRWKIKCRV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-30 | 94 | 153 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g006825.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013443814.1 | 1e-156 | ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A072TJX5 | 1e-155 | A0A072TJX5_MEDTR; Ethylene response factor | ||||
STRING | GLYMA03G26520.1 | 3e-57 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF512 | 33 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 7e-38 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g006825.1 |
Entrez Gene | 25500044 |
Publications ? help Back to Top | |||
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