PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g427710.1
Common NameMTR_7g427710
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HD-ZIP
Protein Properties Length: 643aa    MW: 72300.2 Da    PI: 6.859
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g427710.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.1e-172272656
                     S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     ++t++q+++Le++F+ ++yp++++r +L ++l ++ +++k+WFqNrR++ k
  Medtr7g427710.1 22 RHTSNQIQRLEAVFKTCSYPDEKQRLQLGRELAMDPTKIKFWFQNRRTQLK 72
                     689********************************************9987 PP
2START163.81.3e-511633922206
                      HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGG.....CT-TT-S... CS
            START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddke.....qWdetla... 77 
                      +a  a+qel+ +++ +ep+W+ks     + +n +++ + f+++++       ++ea+r sg v+m++ +lve ++d        +W e ++   
  Medtr7g427710.1 163 IATNAMQELIFLMETNEPLWMKSNnngrDTLNLETYETMFPRTNNqlknpnIRIEASRKSGDVIMNALTLVEMFMDPIDfveqhKWMELFPtiv 256
                      56789*******************9999999999999999999999****99***********************9998999999999999999 PP

                      .EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
            START  78 .kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
                        a+t+eviss       g lqlm+ elq+lsplvp R+f+f+Ry++q  +++w+ivdvS + + ++   +s  R+++lpSg+ i+ ++ng+sk
  Medtr7g427710.1 257 tIAKTIEVISSRtkdgldGSLQLMYEELQVLSPLVPiREFYFLRYCKQ-FEEGWAIVDVSYEFPHNKH-FASKFRGHRLPSGCFIQNMPNGKSK 348
                      99*********9999*********************************.******************9.8************************ PP

                      EEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 164 vtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                      vtw+ehv++++r p h+l+r ++ sg+a+ga +w+ tlq  ce+
  Medtr7g427710.1 349 VTWIEHVEVEDRNPvHMLYRNVIYSGVAFGAEKWLTTLQIMCER 392
                      ***************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.61E-171076IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-181178IPR009057Homeodomain-like
SMARTSM003898.1E-161478IPR001356Homeobox domain
PROSITE profilePS5007115.8561474IPR001356Homeobox domain
CDDcd000862.92E-141575No hitNo description
PfamPF000462.4E-152272IPR001356Homeobox domain
PROSITE profilePS5084847.759153395IPR002913START domain
SuperFamilySSF559611.51E-30156394No hitNo description
CDDcd088759.21E-105157391No hitNo description
SMARTSM002345.4E-36162392IPR002913START domain
PfamPF018522.4E-44163392IPR002913START domain
Gene3DG3DSA:3.30.530.203.6E-9216362IPR023393START-like domain
SuperFamilySSF559616.04E-16409614No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MEHHSEGSVS SDTHKRKKCC NRHTSNQIQR LEAVFKTCSY PDEKQRLQLG RELAMDPTKI  60
KFWFQNRRTQ LKTQNERDDN CTLIQENDKI RSQNKAMREA LQNVICSTCD GQKLRIENAR  120
LKEELVRVSS IAAGYTGSSS TLPNVPYQPA GLSHKEKSLM FDIATNAMQE LIFLMETNEP  180
LWMKSNNNGR DTLNLETYET MFPRTNNQLK NPNIRIEASR KSGDVIMNAL TLVEMFMDPI  240
DFVEQHKWME LFPTIVTIAK TIEVISSRTK DGLDGSLQLM YEELQVLSPL VPIREFYFLR  300
YCKQFEEGWA IVDVSYEFPH NKHFASKFRG HRLPSGCFIQ NMPNGKSKVT WIEHVEVEDR  360
NPVHMLYRNV IYSGVAFGAE KWLTTLQIMC ERIASYLMDS GHSTVIPSPD GKRTMMKLTQ  420
RMVTNFCESI NGSASHRWTT LSTLNEITVR KSQPNGEVLS ASTIIWLPLP PQTVFNFLND  480
ERKRSQSNVL SNGNDVQEVV HIANVSRPGN CISVFNGFST GNNNMLILQE SCVDSSGSLV  540
VSCPVDSSIM SEVDPSYIQL LPSGFIITSD GKQNDNNIQG GNSGNDDVAS TSSNTNIGGS  600
LLTVAFQIMV NSLPSNMESV PVVNGLICKT VEQIKAALNC PM*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During embryo development, expressed in all cells at the 4- and 16-cell embryo stages. Expression is restricted to the protoderm from the globular stage onward. {ECO:0000269|PubMed:25564655}.
UniprotTISSUE SPECIFICITY: Expressed in apical meristems and young epidermal tissue including trichomes and stipules. Expressed in lateral root tips, the L1 layer of apical inflorescence meristems and early flower primordia, carpel and petal epidermis, stigma papillae, ovule primordia, nucellus and embryo. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g427710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024625408.10.0homeobox-leucine zipper protein HDG11
SwissprotQ9FX310.0HDG11_ARATH; Homeobox-leucine zipper protein HDG11
TrEMBLA0A072TYN20.0A0A072TYN2_MEDTR; Homeobox leucine zipper protein
STRINGXP_004515249.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Khosla A, et al.
    HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23.
    Plant Cell, 2014. 26(5): p. 2184-2200
    [PMID:24824485]
  4. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  5. Cai XT,Xu P,Wang Y,Xiang CB
    Activated expression of AtEDT1/HDG11 promotes lateral root formation in Arabidopsis mutant edt1 by upregulating jasmonate biosynthesis.
    J Integr Plant Biol, 2015. 57(12): p. 1017-30
    [PMID:25752924]
  6. Yu LH, et al.
    Arabidopsis EDT1/HDG11 improves drought and salt tolerance in cotton and poplar and increases cotton yield in the field.
    Plant Biotechnol. J., 2016. 14(1): p. 72-84
    [PMID:25879154]
  7. Zhu Z, et al.
    Overexpression of AtEDT1/HDG11 in Chinese Kale (Brassica oleracea var. alboglabra) Enhances Drought and Osmotic Stress Tolerance.
    Front Plant Sci, 2016. 7: p. 1285
    [PMID:27625663]
  8. Liu Y, et al.
    Overexpression of AtEDT1 promotes root elongation and affects medicinal secondary metabolite biosynthesis in roots of transgenic Salvia miltiorrhiza.
    Protoplasma, 2017. 254(4): p. 1617-1625
    [PMID:27915455]
  9. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  10. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  11. Zheng G, et al.
    Over-Expression of Arabidopsis EDT1 Gene Confers Drought Tolerance in Alfalfa (Medicago sativa L.).
    Front Plant Sci, 2017. 8: p. 2125
    [PMID:29326737]