PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g117690.1
Common NameMTR_7g117690
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 172aa    MW: 19197.8 Da    PI: 4.7746
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g117690.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.5e-182676155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a  +l+g
  Medtr7g117690.1 26 PVYRGVRKRR-WGKWVSEIREPKK---KSRIWLGSFPVPEMAAKAYDVAVYCLKG 76
                     68*****887.**********854...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-112676IPR001471AP2/ERF domain
PROSITE profilePS5103222.9982784IPR001471AP2/ERF domain
SMARTSM003801.4E-342790IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-312785IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-202786IPR016177DNA-binding domain
PRINTSPR003676.7E-122839IPR001471AP2/ERF domain
CDDcd000181.78E-302885No hitNo description
PRINTSPR003676.7E-126686IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MDNQPTPFIE DDVTAADRQR GGTRHPVYRG VRKRRWGKWV SEIREPKKKS RIWLGSFPVP  60
EMAAKAYDVA VYCLKGQKAQ LNFPDEVENL PLPATCTARD IQAAAAKAAA SMMKASLDEK  120
GCIVSDEDDF WGEIELPELM ESDSSWSCSG DIMTWPEVEV LAQQHFMSSC L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-182286974Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.57450.0root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g117690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450658.11e-125ethylene-responsive transcription factor ERF023
SwissprotQ1ECI22e-58ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A072U5P11e-124A0A072U5P1_MEDTR; AP2 domain class transcription factor
STRINGXP_004494833.13e-87(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63752847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.12e-59ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]