PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr7g117590.1 | ||||||||
Common Name | MTR_7g117590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 176aa MW: 19959.3 Da PI: 4.4163 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.5 | 1.8e-11 | 102 | 172 | 26 | 98 |
T---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 26 hggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++ ++sk ++ de+g+++e ++ r k+++ + ++GW +Fv++++Lk gD + F+ d + +l+v v+r Medtr7g117590.1 102 SMYV-NQSKIRVVDDETGEEYECEV--RDKGNWteKYVRSGWVDFVREKELKHGDLLFFTID-NPPHKLFVLVIR 172 4445.3554445566**********..66666666899**********************65.588888999887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02362 | 8.1E-9 | 105 | 172 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.3E-8 | 106 | 162 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.24E-8 | 108 | 169 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.347 | 109 | 174 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.80E-9 | 112 | 172 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 176 aa Download sequence Send to blast |
MSSSAPSSSN RCCCNCSDVI DPELEELMPN FHPLPVDENP NEEEVDGPVF AQFQNFQNGD 60 HTWMHNISSD AAVGSFLVDF YFIFAGLFAH GIFIRKLQAV QSMYVNQSKI RVVDDETGEE 120 YECEVRDKGN WTEKYVRSGW VDFVREKELK HGDLLFFTID NPPHKLFVLV IRGGS* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr7g117590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC130200 | 4e-75 | AC130200.30 Medicago truncatula clone mth1-64n13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A072U4K3 | 1e-128 | A0A072U4K3_MEDTR; B3 DNA-binding domain protein | ||||
STRING | AES98672 | 5e-29 | (Medicago truncatula) |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr7g117590.1 |
Entrez Gene | 25499760 |
Publications ? help Back to Top | |||
---|---|---|---|
|