PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g117455.1
Common NameMTR_7g117455
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 458aa    MW: 51626.4 Da    PI: 6.0134
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g117455.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.71.5e-30118207186
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ +
  Medtr7g117455.1 118 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRGR 207
                      89***************************966778999*************************************************543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-42113229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-30115209IPR015300DNA-binding pseudobarrel domain
CDDcd100171.67E-27116211No hitNo description
SMARTSM010199.8E-24118223IPR003340B3 DNA binding domain
PfamPF023628.2E-28118217IPR003340B3 DNA binding domain
PROSITE profilePS5086314.001118218IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MEQVKGYCSD SRDEEEEEEG ADDIIAITGG GGGEEISSSS SRLQLQTSQQ EEEEEEEEEE  60
EDVGVGKLNE EEVDLMELRL GGGGISKSKG SDEGLGIGCC SNSKDEEEAV VVEKEHMFDK  120
VVTPSDVGKL NRLVIPKQHA EKYFPLDSST NEKGLLLNFE DRNGKMWRFR YSYWNSSQSY  180
VMTKGWSRFV KEKKLDAGDI VSFHRGRAEL HRHRLYIDWR PRAHSQYSHH HHQYLIPQYP  240
PPPPSLPFYL PPNHHYHYSS YAATARSLYT SPQYSHLPNP NYAAPSPTIS HPQYYNTNFY  300
TTTTTTTTLH QQQQQQQYHH PAPAADHLLV DNNNNMNPLY YLTSSPITPP STTTATGDQH  360
LQGSVVQGHQ QDQRNVNVPM NMIIDSVPVA HHHLGGNVNT GGKRLRLFGV NMECDSSSSS  420
EPPQVTTTSG DHDHHHRGGT SLHFDLDPSN SQYRRHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A9e-611112221113B3 domain-containing transcription factor NGA1
5os9_B9e-611112221113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g117455.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0730900.0DQ073090.1 Medicago sativa clone Agat010 SSR marker sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450620.10.0B3 domain-containing protein Os03g0120900 isoform X1
TrEMBLA0A072U6670.0A0A072U667_MEDTR; B3 DNA-binding domain protein
STRINGXP_004494886.11e-100(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.15e-60B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]