PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g117455.1 | ||||||||
Common Name | MTR_7g117455 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 458aa MW: 51626.4 Da PI: 6.0134 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 96.7 | 1.5e-30 | 118 | 207 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+kv tpsdv+k++rlv+pk++ae++ ++ +e++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ + Medtr7g117455.1 118 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRGR 207 89***************************966778999*************************************************543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.3E-42 | 113 | 229 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-30 | 115 | 209 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.67E-27 | 116 | 211 | No hit | No description |
SMART | SM01019 | 9.8E-24 | 118 | 223 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.2E-28 | 118 | 217 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.001 | 118 | 218 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MEQVKGYCSD SRDEEEEEEG ADDIIAITGG GGGEEISSSS SRLQLQTSQQ EEEEEEEEEE 60 EDVGVGKLNE EEVDLMELRL GGGGISKSKG SDEGLGIGCC SNSKDEEEAV VVEKEHMFDK 120 VVTPSDVGKL NRLVIPKQHA EKYFPLDSST NEKGLLLNFE DRNGKMWRFR YSYWNSSQSY 180 VMTKGWSRFV KEKKLDAGDI VSFHRGRAEL HRHRLYIDWR PRAHSQYSHH HHQYLIPQYP 240 PPPPSLPFYL PPNHHYHYSS YAATARSLYT SPQYSHLPNP NYAAPSPTIS HPQYYNTNFY 300 TTTTTTTTLH QQQQQQQYHH PAPAADHLLV DNNNNMNPLY YLTSSPITPP STTTATGDQH 360 LQGSVVQGHQ QDQRNVNVPM NMIIDSVPVA HHHLGGNVNT GGKRLRLFGV NMECDSSSSS 420 EPPQVTTTSG DHDHHHRGGT SLHFDLDPSN SQYRRHH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 9e-61 | 111 | 222 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 9e-61 | 111 | 222 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g117455.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ073090 | 0.0 | DQ073090.1 Medicago sativa clone Agat010 SSR marker sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013450620.1 | 0.0 | B3 domain-containing protein Os03g0120900 isoform X1 | ||||
TrEMBL | A0A072U667 | 0.0 | A0A072U667_MEDTR; B3 DNA-binding domain protein | ||||
STRING | XP_004494886.1 | 1e-100 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2338 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01030.1 | 5e-60 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g117455.1 |
Entrez Gene | 25499742 |
Publications ? help Back to Top | |||
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