PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g117200.1
Common NameMTR_7g117200
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 329aa    MW: 37432 Da    PI: 6.9453
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g117200.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.21.6e-28117178159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      ldD+y+WrKYGqK++ g++f+r+YYrCt++   gC ++k+v+rs+edp+++e+tY+g+H+++
  Medtr7g117200.1 117 LDDEYSWRKYGQKDILGAKFSRGYYRCTHRngqGCLATKQVQRSDEDPTIIEVTYRGRHTCT 178
                      58***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-27105178IPR003657WRKY domain
PROSITE profilePS5081121.643112175IPR003657WRKY domain
SuperFamilySSF1182901.12E-24115179IPR003657WRKY domain
SMARTSM007742.0E-38117179IPR003657WRKY domain
PfamPF031067.6E-26118177IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEETTKRKRD SIINELVHGK ELANQLSNHI ILSSNETNEF LIDKIISTYQ KALTMLNVGD  60
GKMKDSHSSF TNESPKSEVI IDQEFNHNAL FKKRKSMPKW KEQVKICTNT GLSEGSLDDE  120
YSWRKYGQKD ILGAKFSRGY YRCTHRNGQG CLATKQVQRS DEDPTIIEVT YRGRHTCTHS  180
QAKPLKREFP SKLKLKIKGL EKNKLHNDIK NQLQTKGTSF TSKAELDVKR KDLEETKEDI  240
FPWFSFPSPS IGSENEIMME SNFFNLSEYQ LGYTGLCQNG PTSESDITDT VSAPTSVTNS  300
PILDLDILLQ RGDFDTDFPL NTPEYFSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-18105175774Disease resistance protein RRS1
5w3x_D1e-18105175774Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.10720.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g117200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626559.10.0probable WRKY transcription factor 41
TrEMBLG7L4270.0G7L427_MEDTR; Putative transcription factor WRKY family
STRINGAES827770.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.16e-55WRKY family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]