PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g113830.1
Common NameMTR_7g113830
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 317aa    MW: 36486.1 Da    PI: 6.3792
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g113830.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-13114165155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Medtr7g113830.1 114 QRMTHIAVERNRRKQMNEYLSVLRSLMPES---YVQRGDQASIIGGAINFVKKLE 165
                      79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.16E-12112169No hitNo description
SuperFamilySSF474598.64E-16113175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.326113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-14113169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-10119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MCLPEENRER ERSMALEPTL LYPQDPFTYG FNKDHYNYNL LTDSEANFDY TNFNLQNEEQ  60
GFVSTFLKNQ QTENYPYENW SNNCPSLDSS ISTRSRSKKR RVKTSKNKEE IENQRMTHIA  120
VERNRRKQMN EYLSVLRSLM PESYVQRGDQ ASIIGGAINF VKKLEQKLQF LGVQKQKEGK  180
FDTIVENKNK PFSEFFTFPQ YSTSDGVCES SETKMGGEVQ SRNIADIEVT MVESHANLKI  240
RTKKRPKQLL KMVSSLHGLC LTILHLNVTT ADEFVFYSLS VKVEDDCKLG SVDEIAAAIY  300
QILESIQQES SINILN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197102KKRRVK
2114125RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g113830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1502440.0AC150244.2 Medicago truncatula chromosome 7 clone mth2-180p14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626318.20.0transcription factor bHLH96
SwissprotQ9C7T44e-83BH096_ARATH; Transcription factor bHLH96
TrEMBLG7KZP30.0G7KZP3_MEDTR; Putative transcription factor bHLH family
STRINGAES825360.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-81bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]