PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g111320.1
Common NameMTR_7g111320
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 692aa    MW: 75982.1 Da    PI: 6.4222
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g111320.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.12.4e-16442488455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Medtr7g111320.1 442 VHNLSERRRRDRINERMRALQELIPNC-----NKADKASMLDEAIEYLKSLQ 488
                      6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.64E-10434492No hitNo description
SuperFamilySSF474595.63E-21435505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-21435496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.844438487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-13442488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-17444493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MMPLHELYHM SKEKVDHKEM NNSCAPDQSS VPRNDLFELV WQNDQILVHG QSSNSNRAKM  60
TPTLPSHTLK GHDKYSGQHA NETNTRIGKF EDLDNGLNEI ITRSVSSSQD EDLMTMMPWL  120
NCAMDDEHSL HYSSCFVHEP GARTNDFAAT NKFSLLDRKS NCIQVFSDSH KQGILSKGSS  180
LAVEDFDTSE LKTSTNQLNM SSLLQQCQPS FESIRFRESG LSENNTKGNA NQHAPCEEIS  240
HVPSSSTVMN FTHFAKPAAI VKANLQNIGF SSSRSERVGA KNKDAAAIGR NPCESSKVDL  300
SVECPKSSAI HCHQSVEPSR VGLKPLEPKS LEKNTTVSTS ACKEDVSKVD QTSNQVLSES  360
SRKGQEVFKK CTELTVASSS VCSDNGVHRS SDDANQNLKR KNLDSEDSEW HSEDFEDESI  420
GVKRTDHGRG VTGSKKNRST EVHNLSERRR RDRINERMRA LQELIPNCNK ADKASMLDEA  480
IEYLKSLQLQ LQIMSMGGGG LYMPMTLPAG MQHMHAAHMF PFSPMSVAMQ MGLGVPQFQG  540
THLPVAHTSG LAALHGMVRP NPQMFGLQAG QGLHMPMPSA SMFSYPGEPV MNSSAVELNA  600
SGTAGLMETV ESASASKLKD QMPKLKDPMP NVNSQVMLNN KGCSSTNQMS IQCEATTGGL  660
EQSNVVLDSA HALLENDKRD NIEIEIDKSH E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1446451ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g111320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1578940.0AC157894.3 Medicago truncatula chromosome 7 clone mth2-85d15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626129.20.0transcription factor PIF3
TrEMBLG7KVK40.0G7KVK4_MEDTR; Phytochrome-interacting factor 3.1
STRINGAES823470.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.29e-37phytochrome interacting factor 3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]