PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g106510.1
Common NameMTR_7g106510
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 504aa    MW: 55644.7 Da    PI: 4.8475
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g106510.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.81.9e-101253142
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     k ien+++r+  + +R++g++ K + + +LC++e++ ++f++
  Medtr7g106510.1 12 KLIENNTRRKAVYKRRLKGLFTKMKHVTILCGIEACAVVFGP 53
                     569*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.0E-7463IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.965452IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-16697IPR002100Transcription factor, MADS-box
CDDcd002662.61E-20688No hitNo description
PfamPF003194.7E-101454IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MTRIRKKKIT SKLIENNTRR KAVYKRRLKG LFTKMKHVTI LCGIEACAVV FGPGDTKPSI  60
WPSPTVAEDL ITKFESMSLD VQSKNKTDQL TFLKDKGKKL EASLEKINKE NEETLMGAYL  120
HQIENEGKSL NDFDHDVQNR LIAFTLEKIK ITRKMSRHLE KEILPLNNPP PPLAPISFTL  180
DNGDGVNMYG HVSNQQPLSD LVKKVDQMSS GFNNNPESCM GIPPLADLRG GGCDNLANQA  240
DFGSFDKGMG IPSPEYSSGG FDASFFQDNL ENFDSIMEIP SHENHSGSVH DMFLPRGNLE  300
NFINNIGSNI GIQSHENPSG GVGVLPPQGY FGGQSNFQGF DDITGSNTRI LPHENLNGNV  360
DSLPPQKKFE GQENFRGFDD NTGSGMWIPH SGGDTLLPQE NFESQFNFED VDNNSGSGVG  420
DVDVLSHQGN FGVQENFRGF DDNTCSNMWK PPHENPSNGG VDMMTFHQNN FGGNINGDGM  480
WSFNANFVDN NYGSNFNPEF PSE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1428RKKKITSKLIENNTRRKAVYKRRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g106510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450231.10.0uncharacterized protein LOC25499501
TrEMBLA0A072U3F60.0A0A072U3F6_MEDTR; MADS-box transcription factor family protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.12e-21AGAMOUS-like 38
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]