PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr7g105170.1

Common Name

MTR_7g105170

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

NAC

Protein Properties

Length: 258aa MW: 29660.1 Da PI: 5.98

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr7g105170.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	138.5	4.1e-43	4	135	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +ppG+rF Pt+eel+++yL+k +eg+k ++ +vi+ v+iy+++P++Lp+ + ++++w+fF++r++++ +g r++r t++gyWkatg+ Medtr7g105170.1 4 MPPGYRFYPTEEELISFYLHKMLEGEKeYTIRTVIPVVNIYDYNPSQLPQisgeASMRDTEQWFFFIPRQESEVRGGRPKRLTDTGYWKATGSP 97 79********************9996777778**********96556422235569**************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 ++v+s++++ +g+k+t+vfy+grap+g+ktdW m+ey+ Medtr7g105170.1 98 NHVYSSDNRIIGVKRTMVFYSGRAPNGKKTDWKMNEYK 135 ***********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-45	3	164	IPR003441	NAC domain
PROSITE profile	PS51005	47.468	4	164	IPR003441	NAC domain
Pfam	PF02365	6.6E-22	5	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MDNMPPGYRF YPTEEELISF YLHKMLEGEK EYTIRTVIPV VNIYDYNPSQ LPQISGEASM 60 RDTEQWFFFI PRQESEVRGG RPKRLTDTGY WKATGSPNHV YSSDNRIIGV KRTMVFYSGR 120 APNGKKTDWK MNEYKAIQID EASSSNKAAP KLRQEFSLCR VYKKSKCLRA FDRRPPPRRV 180 TTHVQNAQEH QKDSSCEHDV QISMDIISAT NSPESSSSID HVQQPSQEVG EASQMDIADY 240 DALLDWEQVD WFLGSEP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-33	3	164	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-33	3	164	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-33	3	164	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-33	3	164	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-33	3	164	19	168	NAC domain-containing protein 19
3swm_B	2e-33	3	164	19	168	NAC domain-containing protein 19
3swm_C	2e-33	3	164	19	168	NAC domain-containing protein 19
3swm_D	2e-33	3	164	19	168	NAC domain-containing protein 19
3swp_A	2e-33	3	164	19	168	NAC domain-containing protein 19
3swp_B	2e-33	3	164	19	168	NAC domain-containing protein 19
3swp_C	2e-33	3	164	19	168	NAC domain-containing protein 19
3swp_D	2e-33	3	164	19	168	NAC domain-containing protein 19
4dul_A	1e-33	3	164	16	165	NAC domain-containing protein 19
4dul_B	1e-33	3	164	16	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr7g105170.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013450122.1	0.0	NAC domain-containing protein 90
TrEMBL	A0A072UEA7	0.0	A0A072UEA7_MEDTR; NAC transcription factor-like protein
STRING	XP_004494211.1	1e-132	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	6e-73	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Medtr7g105170.1
Entrez Gene	25499406

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]