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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g100880.1 | ||||||||
Common Name | MTR_7g100880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 85aa MW: 9267.05 Da PI: 10.6064 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 132.1 | 1.4e-41 | 19 | 84 | 5 | 70 |
S1FA 5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 k+ ++G+nPGl+vllv+gglll+fl+gny+lyvyaqk+lPPrkkkP+skkk+k+e+lkqGv++PGe Medtr7g100880.1 19 KAGSQGFNPGLVVLLVIGGLLLTFLIGNYALYVYAQKALPPRKKKPISKKKMKKERLKQGVSAPGE 84 56789************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04689 | 1.3E-39 | 21 | 84 | IPR006779 | DNA binding protein S1FA |
ProDom | PD019013 | 1.0E-4 | 22 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MADEFEFGDK IPPSFDRMKA GSQGFNPGLV VLLVIGGLLL TFLIGNYALY VYAQKALPPR 60 KKKPISKKKM KKERLKQGVS APGE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.24675 | 1e-111 | glandular trichome| root| seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g100880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT141610 | 1e-140 | BT141610.1 Medicago truncatula clone JCVI-FLMt-6A8 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003625597.1 | 6e-54 | DNA-binding protein S1FA | ||||
Swissprot | Q42337 | 9e-14 | S1FA2_ARATH; DNA-binding protein S1FA2 | ||||
Swissprot | Q7XLX6 | 8e-14 | S1FA2_ORYSJ; DNA-binding protein S1FA2 | ||||
TrEMBL | G7L1S4 | 1e-52 | G7L1S4_MEDTR; DNA-binding protein S1FA | ||||
STRING | AES81815 | 2e-53 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5409 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09735.1 | 1e-06 | S1FA-like DNA-binding protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g100880.1 |
Entrez Gene | 11436340 |
Publications ? help Back to Top | |||
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