PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g092540.2
Common NameMTR_7g092540
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 308aa    MW: 34766.4 Da    PI: 8.9699
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g092540.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.3e-10256300755
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       +Er RR ri +++ +L+e++P+ +     k    +e+L +AveYIk+Lq
  Medtr7g092540.2 256 LAERVRRTRISERMRKLQEIVPNiD-----KQTCTSEMLDLAVEYIKDLQ 300
                      68*********************55.....667888*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.1249299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-14252306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.60E-10253304No hitNo description
Gene3DG3DSA:4.10.280.104.2E-12254306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-10255305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-7256300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDLNSHYQQL QQNQPNSRLL RFRSSFKQQG EGCGGSATAA TNSGETSSST FREFMDHNPS  60
NHKVDNNESS LSQRHMNSQQ GYRMDQHKGF YTNLLRQSSS HDGHFSNNNI ISFGNGYEPM  120
KGVENYDGVK DSDGELTLSM NILNNQIGFS PRTPSSFRML SQNPKTGSDG IGTTSHDDRR  180
QVGSNDDAQY YGHKLVYDSN DQNVGVRNQV DTLSHHLSLP RKSSEMFVVE KLLQFPDSVP  240
SSIRAKRGFA THPRSLAERV RRTRISERMR KLQEIVPNID KQTCTSEMLD LAVEYIKDLQ  300
KQLKVLN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.98570.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g092540.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1411140.0AC141114.14 Medicago truncatula clone mth2-8g20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625199.10.0transcription factor bHLH130
SwissprotQ66GR32e-47BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A072U3D50.0A0A072U3D5_MEDTR; Transcription factor bHLH122-like protein
STRINGAES814170.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.17e-50bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]