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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g090410.1 | ||||||||
Common Name | MTR_7g090410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 30065.4 Da PI: 9.3381 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.4 | 6.3e-14 | 66 | 118 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR++iNs ++ Lr+llP + + kK+s + ++ +YI +Lq Medtr7g090410.1 66 KKLNHNASERDRRKKINSLISSLRSLLPGeD---QTKKMSIPVTISRVLKYIPDLQ 118 6789*************************66...8888***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.665 | 65 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.46E-5 | 66 | 122 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.1E-13 | 66 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.7E-11 | 66 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.94E-16 | 66 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-10 | 71 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MVAFCPPQFS YSNMGWLLEE LEPESLISHK EKNYASLEYS LPYHQFSSPK EHVEIERPPS 60 PKLMAKKLNH NASERDRRKK INSLISSLRS LLPGEDQTKK MSIPVTISRV LKYIPDLQKQ 120 VQGLTKKKEE LLSRISHRQE YAVNKESQRK KIPNYNSAFV VSTSRLNDTE LVIHISSYEA 180 NKIPLSEILM CLENNGLLLL NSSSSKTFGG RLFYNLHFQV DKTQRYECDD LIQKLSSIYE 240 KQQNNHLGTM DQTINSVLIY * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g090410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC125478 | 0.0 | AC125478.14 Medicago truncatula clone mth2-31i19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003625051.2 | 0.0 | transcription factor ORG2 | ||||
TrEMBL | G7KRQ0 | 0.0 | G7KRQ0_MEDTR; Putative transcription factor bHLH family | ||||
STRING | AES81269 | 1e-180 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2402 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 3e-44 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g090410.1 |
Entrez Gene | 11433801 |
Publications ? help Back to Top | |||
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