PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g086940.1
Common NameMTR_7g086940
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WOX
Protein Properties Length: 273aa    MW: 29534.3 Da    PI: 6.6231
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g086940.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.41.8e-162686257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     r+R+t+++eq+ +Le+ F++   +p +ee  ++ k l    ++ +++V++WFqNrR + ++
  Medtr7g086940.1 26 RSRWTPKPEQILILESIFNSgMVNPPKEETIKIRKLLekfgNVGDANVFYWFQNRRSRSRR 86
                     89*****************99*************************************997 PP
2Wus_type_Homeobox105.72.9e-342588265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +r+RWtP+peQi iLe++++sG+++P+kee+ +i++ Le++G+++d+NVfyWFQNr++R+r++q
    Medtr7g086940.1 25 VRSRWTPKPEQILILESIFNSGMVNPPKEETIKIRKLLEKFGNVGDANVFYWFQNRRSRSRRRQ 88
                       589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.28E-141993IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-92093IPR009057Homeodomain-like
PROSITE profilePS5007111.6932287IPR001356Homeobox domain
SMARTSM003892.8E-72491IPR001356Homeobox domain
PfamPF000463.4E-142686IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEDKMQHDPP NNTPTQHGSE KTEPVRSRWT PKPEQILILE SIFNSGMVNP PKEETIKIRK  60
LLEKFGNVGD ANVFYWFQNR RSRSRRRQRQ MQQATLDQQR NQMAMMQPQQ VVNDGASAIP  120
CDMVQTNPTM VFGGSSSCLN DSSGSSSSSC GGVLSGQQGM DGLFSVSSQM GFLGVDQTLA  180
APSLLCPSLS PNFNYHSGFG GASTVTGLAT VFINGIATEI QAGPLDIKTV FGEDVMLVHS  240
SGVPVPTNEH GILIQSLHHG ESYFLVSKSA QV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.227090.0seed
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g086940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0528460.0BT052846.1 Medicago truncatula clone MTYFH_FI_FJ_FK1G-A-9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003624740.10.0WUSCHEL-related homeobox 11
SwissprotQ6X7J32e-63WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBLB7FL740.0B7FL74_MEDTR; Putative transcription factor Homobox-WOX family
STRINGAES809580.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58983152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.13e-33WUSCHEL related homeobox 11
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Hu X,Xu L
    Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis.
    Plant Physiol., 2016. 172(4): p. 2363-2373
    [PMID:27784768]
  3. Sheng L, et al.
    Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture.
    Development, 2017. 144(17): p. 3126-3133
    [PMID:28743799]
  4. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]
  5. Baesso B, et al.
    Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana.
    Plant Biol (Stuttg), 2018. 20(3): p. 426-432
    [PMID:29450949]