PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g085220.1
Common NameMTR_7g085220
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 341aa    MW: 38464.5 Da    PI: 8.9972
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g085220.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.62.1e-5281421128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtd el+ +yL+kk+++ +l++ ++i+evdiyk++PwdLp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk++++
  Medtr7g085220.1   8 LPPGFRFHPTDAELILHYLRKKIASIPLPV-SIIAEVDIYKLDPWDLPAKASFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVA 100
                      79****************************.89***************999999**************************************** PP

              NAM  95 k........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +        +++ +g+kk Lvfykg+ pkg kt+W+mheyrl
  Medtr7g085220.1 101 SlpcgggrsQENIIGVKKALVFYKGKPPKGIKTNWIMHEYRL 142
                      99**998877777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-644169IPR003441NAC domain
PROSITE profilePS5100561.1698169IPR003441NAC domain
PfamPF023654.6E-279142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGTPQTNLPP GFRFHPTDAE LILHYLRKKI ASIPLPVSII AEVDIYKLDP WDLPAKASFG  60
EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKTIVA SLPCGGGRSQ ENIIGVKKAL  120
VFYKGKPPKG IKTNWIMHEY RLVDNNKPIK LKDSSMRLDD WVLCRIYKKS KCALTSTESS  180
ETMVGEVEHA EETQFQETLF PITKNTTSPL QNTLMSQKSV SFSNLLDAMD YSMLSSFLSE  240
NSNNPSGIGT SSGFNTENFN QQQSSHINTC NNYMSQKNPQ SNTLKHQLSN VDEDMLYPSK  300
KYLSSSCNFP NINSQYENYL MKQSLMNQQL LLGPHHQYQG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-72517314169NO APICAL MERISTEM PROTEIN
1ut4_B7e-72517314169NO APICAL MERISTEM PROTEIN
1ut7_A7e-72517314169NO APICAL MERISTEM PROTEIN
1ut7_B7e-72517314169NO APICAL MERISTEM PROTEIN
4dul_A7e-72517314169NAC domain-containing protein 19
4dul_B7e-72517314169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.141970.0flower| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g085220.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1457530.0AC145753.1 Genomic sequence for Medicago truncatula, clone MTABa0058M19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003624592.10.0NAC transcription factor 47
SwissprotQ84TD61e-106NAC47_ARATH; NAC transcription factor 47
TrEMBLG7KZD30.0G7KZD3_MEDTR; NAC transcription factor-like protein
STRINGAES808100.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66212750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-109NAC domain containing protein 47
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]