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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g083330.1 | ||||||||
Common Name | MTR_7g083330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NAC | ||||||||
Protein Properties | Length: 195aa MW: 22900.1 Da PI: 9.4614 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 95.3 | 9.6e-30 | 18 | 142 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lp+GfrF+Ptd+elv++yL++kv +++l+ + e+d++++ePw+Lp+ ++++++ ++yfF r+++ + + ++r + +g W+ +++e Medtr7g083330.1 18 LPVGFRFDPTDHELVDYYLTRKVCNQPLPN--LLLEFDVFQTEPWKLPRdnRTSSKHMRYYFFDIRNRRFE-NMDARR-AGNGEWRIYERNEEF 107 79*************************887..799*************52244445556688888877765.456666.588************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyr 127 ++++l+g k+t+v+ + + +++ t+W mhe+ Medtr7g083330.1 108 ALSNNQLIGRKNTFVYRRIQGNQALMTQWRMHEFV 142 **9***************9**************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-30 | 12 | 147 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.516 | 18 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.6E-18 | 19 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MAVDEKYSEL VSEDGMKLPV GFRFDPTDHE LVDYYLTRKV CNQPLPNLLL EFDVFQTEPW 60 KLPRDNRTSS KHMRYYFFDI RNRRFENMDA RRAGNGEWRI YERNEEFALS NNQLIGRKNT 120 FVYRRIQGNQ ALMTQWRMHE FVIGTIFHQT KVYSAVGAYR IFKMKVAKAE KKAPPTVIDF 180 TMEDASVSAP PPSP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-19 | 12 | 143 | 9 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.7309 | 0.0 | flower| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g083330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT145051 | 0.0 | BT145051.1 Medicago truncatula clone JCVI-FLMt-18K8 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013449453.1 | 1e-146 | NAC domain-containing protein 83 | ||||
TrEMBL | I3SX53 | 1e-144 | I3SX53_MEDTR; NAC transcription factor-like protein | ||||
STRING | XP_004492996.1 | 3e-57 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13413 | 11 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10500.1 | 2e-24 | NAC domain containing protein 53 |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g083330.1 |
Entrez Gene | 25498953 |
Publications ? help Back to Top | |||
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