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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g078120.1 | ||||||||
Common Name | MTR_7g078120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB_related | ||||||||
Protein Properties | Length: 662aa MW: 74910.2 Da PI: 6.9477 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.4 | 7.6e-09 | 483 | 532 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 r WT+eE+++++d+vk + W+ I t++ ++++++++s+++++ Medtr7g078120.1 483 RRCWTAEEEKKFKDVVKSNPASldrcFWDDIFTTFP-KKSRESLVSYYFNV 532 568*****************99**************.9**********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51011 | 16.893 | 1 | 65 | IPR001606 | ARID DNA-binding domain |
SMART | SM00501 | 0.0012 | 2 | 66 | IPR001606 | ARID DNA-binding domain |
Pfam | PF01388 | 1.2E-7 | 5 | 59 | IPR001606 | ARID DNA-binding domain |
Gene3D | G3DSA:1.10.150.60 | 9.9E-12 | 5 | 67 | IPR001606 | ARID DNA-binding domain |
SuperFamily | SSF46774 | 7.33E-14 | 6 | 69 | IPR001606 | ARID DNA-binding domain |
SMART | SM01189 | 7.6E-5 | 387 | 437 | IPR000949 | ELM2 domain |
Pfam | PF00249 | 9.5E-6 | 483 | 532 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.85E-4 | 486 | 533 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 662 aa Download sequence Send to blast |
MLGSEQTLDL YKLFMVVKDK GGYDVVCKNE LWDLVGEEYG LGVKVGSSVK LVYSKYLSGL 60 ETPLKNVVDG EFPKRDLVGD RVKFGERLTE LQAELVLDDY GEGDVGDEVK SVYGCRKKLC 120 DTNRVKVVNP ELNASELEKV YEYIDGRKSC GTNKMKDTNL VSNMAKKVES EGLVDVLMQD 180 CKTNETSLRK LVNQNAAMEI MDDVSDVANS MPGLSDGSKS CANDDANDSG DDVLMLDPSS 240 VNRESFGRKR KRDDLMSEMQ SWVIRTAKNP CDPVLGSMPE KSKWKSYGNQ EIWKKVLLFR 300 EAAFLKKDFG SDCEKLSWLA QRMHPSMYDV NLGVNYNLRQ RIKRDNGVLV GKSASILQRT 360 PDSEAKEKLL DSCVPESILD APPTVNIPLG PNHQAEVPEW TGTTHKSDSK WLGTQIWPLQ 420 IVKSKLLEGE PVGKGRQDSC RCQVQGSVEC VRFHIAEKSA KLKLEIGVAF YQWNLDKAGE 480 EVRRCWTAEE EKKFKDVVKS NPASLDRCFW DDIFTTFPKK SRESLVSYYF NVFLLQRRGY 540 QNRHTPDNID SDDEESEFTP LKGSFGHQTD KSNSFTLLSP KKPQPTPHTK GRQLVNALKF 600 VTEQNTFDVI SAFAPQVGLE QLKVKFWDKL ECLHQDIPIE RKCLLTIYKN QSKAKFHNRP 660 Y* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g078120.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC149204 | 0.0 | AC149204.1 Medicago truncatula chromosome 7 clone mth2-77n20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013449346.1 | 0.0 | AT-rich interactive domain-containing protein 2 | ||||
Refseq | XP_024626172.1 | 0.0 | AT-rich interactive domain-containing protein 2 | ||||
Refseq | XP_024626173.1 | 0.0 | AT-rich interactive domain-containing protein 2 | ||||
TrEMBL | G7L5N9 | 0.0 | G7L5N9_MEDTR; AT-rich interactive domain protein | ||||
STRING | AES80219 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4373 | 17 | 24 |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g078120.1 |
Entrez Gene | 11435600 |
Publications ? help Back to Top | |||
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