PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g077410.1
Common NameMTR_7g077410
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family BES1
Protein Properties Length: 703aa    MW: 78532.3 Da    PI: 5.263
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g077410.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822146.91.7e-45782181134
           DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl.eeaeaagssasasp 90 
                      gg++r+++ +E+E++k+RERrRRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++   +g+ p   +++++ ss+s  p
  Medtr7g077410.1  78 GGNRRSRPVEEKERTKLRERRRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsksQGQMPAgGNSAVVTSSSSHVP 171
                      5889*****************************************************************9755666666533444444433333 PP

           DUF822  91 esslq...sslkssalaspvesysaspksssfpspssldsislasaa 134
                      + +     ++ ++s   sp+e  ++ +k + +psps +d  s++ ++
  Medtr7g077410.1 172 SQQPPsvsLKGVASGYGSPLEYNACPMKDVFIPSPSPYDLSSTSRSQ 218
                      32222212455678899**********************98876543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.0E-3979216IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514458.99E-183259698IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.1E-196262696IPR013781Glycoside hydrolase, catalytic domain
PfamPF013732.8E-103268684IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-68299313IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-68320338IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-68342363IPR001554Glycoside hydrolase, family 14
PRINTSPR008422.5E-5425434IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007501.6E-68435457IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-68508527IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-68542558IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-68559570IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-68577600IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-68617639IPR001554Glycoside hydrolase, family 14
PRINTSPR008422.5E-5668682IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008422.5E-5683697IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MATDMQRLVG MGEDDEEMGM GMKDDDDEDA DYDENGGEHG NVSGMVEIDG GSGMGTGAGD  60
NRFQQHHEFQ EQVGTPGGGN RRSRPVEEKE RTKLRERRRR AITARILAGL RRHGNYNLRV  120
RADINDVIAA LAREAGWVVL PDGTTFPSKS QGQMPAGGNS AVVTSSSSHV PSQQPPSVSL  180
KGVASGYGSP LEYNACPMKD VFIPSPSPYD LSSTSRSQTS MVGDGEAQRD NPPLIGGSID  240
TINEKQTADI TPRLPERDFA GSPYVPVYVM LPLGVINIKC ELVDPDGILK QLRVLKSANV  300
DGVMVDCWWG IVEAHAPQEY NWNGYKRLFQ MVRELKLKLQ VVMSFHECGG NFGDDVCIPL  360
PHWVAEIGRS NPDIFFTDRE GRHNPECLSW GIDKERVLRG RTAVEVYFDF MRSFRIEFNE  420
YFEDGFISMI EVGLGPCGEL RYPSCPVKHG WRYPGIGEFQ CYDQYMLKSL RKAAEERGHT  480
IWARGPDNVG TYNSQPHETG FFCDGGDYDG FYGRFFLNWY SQALVDHGNR VLSMAKLAFE  540
GSCIAAKVSG IYWWYKTASH AAELTSGYYN PCNRDGYAAI TAMLKRNGVN LNIACVDLHT  600
FNQHESFPEP FADPERLVWQ VLNAGWDVGL PVVSENALPC LNRVSYNKVL DNTKPINDPD  660
GRHFSSFTYL RLSPLLMERP NFIEFERFVK RMHGEAVLDL QV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wds_A1e-14726469511444Beta-amylase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g077410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449334.10.0beta-amylase 7
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A072U1V60.0A0A072U1V6_MEDTR; Beta-amylase
STRINGXP_004492727.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108833339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]