PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr7g073240.1 | ||||||||
Common Name | MTR_7g073240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 362aa MW: 41117.4 Da PI: 9.6865 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.5 | 2.4e-18 | 122 | 222 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+lt sdv+++gr+vlpk+++e++ +++++++ l++ed +g++ +k+++ +++s+ yvl+ G ++ +L++gDfv+F +++ ++ Medtr7g073240.1 122 FEKTLTASDVGRLGRMVLPKSCVETYfpPISEPGGVYLQIEDVKGKKLVFKFRFwpNNSSRIYVLE-GVHAWIQSMQLQVGDFVTFNRMD-PGE 213 99**************************888899************99999998555555558888.********************876.888 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 +l ++++r+ Medtr7g073240.1 214 KLIIGFRRA 222 889999987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.3E-27 | 119 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.56E-21 | 120 | 221 | No hit | No description |
SuperFamily | SSF101936 | 1.7E-20 | 120 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.825 | 122 | 223 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.1E-16 | 122 | 222 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-14 | 122 | 223 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 362 aa Download sequence Send to blast |
MKVREIYESL ARTNLSMTLN TPFGNSNSFG GGEKQQQTEN SIPNLSEAQP KSQNLLHKLP 60 KSTLATESEK NVCLASPIHH VARKSPVRRQ RKHISARNLP KITDQELQQL SGDLNSAVVP 120 LFEKTLTASD VGRLGRMVLP KSCVETYFPP ISEPGGVYLQ IEDVKGKKLV FKFRFWPNNS 180 SRIYVLEGVH AWIQSMQLQV GDFVTFNRMD PGEKLIIGFR RASVSSIQVN NIAMSKGMKR 240 KRLCLPQELV VPKKKRTCDI ESKRNKSLLI DNQETLMLKL TWEEAQDFLH PPPTVNSNIV 300 VIEDHVFEEY EEPPIIAKKG IFINGMKEQW IQCDKCSEWR KLESVENLWG QRRCSCSAPM 360 N* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5yzy_C | 4e-55 | 100 | 223 | 1 | 124 | B3 domain-containing transcription repressor VAL1 |
5yzz_C | 4e-55 | 100 | 223 | 1 | 124 | B3 domain-containing transcription repressor VAL1 |
5z00_C | 4e-55 | 100 | 223 | 1 | 124 | B3 domain-containing transcription repressor VAL1 |
5z00_G | 4e-55 | 100 | 223 | 1 | 124 | B3 domain-containing transcription repressor VAL1 |
5z00_K | 4e-55 | 100 | 223 | 1 | 124 | B3 domain-containing transcription repressor VAL1 |
5z00_M | 4e-55 | 100 | 223 | 1 | 124 | B3 domain-containing transcription repressor VAL1 |
6j9a_A | 4e-55 | 100 | 223 | 2 | 125 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 239 | 255 | RKRLCLPQELVVPKKKR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr7g073240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC146784 | 0.0 | AC146784.30 Medicago truncatula clone mth2-172c4, complete sequence. | |||
GenBank | AC195569 | 0.0 | AC195569.4 Medicago truncatula chromosome 7 BAC clone mth2-61d24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012569053.1 | 1e-145 | B3 domain-containing transcription repressor VAL2-like | ||||
TrEMBL | G7KY51 | 0.0 | G7KY51_MEDTR; B3 domain transcription repressor VAL2 | ||||
STRING | AES79839 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF30738 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32010.1 | 4e-90 | HSI2-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr7g073240.1 |
Entrez Gene | 11428698 |
Publications ? help Back to Top | |||
---|---|---|---|
|