PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g073240.1
Common NameMTR_7g073240
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 362aa    MW: 41117.4 Da    PI: 9.6865
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g073240.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.52.4e-18122222199
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+k+lt sdv+++gr+vlpk+++e++   +++++++ l++ed +g++  +k+++  +++s+ yvl+ G     ++ +L++gDfv+F +++  ++
  Medtr7g073240.1 122 FEKTLTASDVGRLGRMVLPKSCVETYfpPISEPGGVYLQIEDVKGKKLVFKFRFwpNNSSRIYVLE-GVHAWIQSMQLQVGDFVTFNRMD-PGE 213
                      99**************************888899************99999998555555558888.********************876.888 PP

                      ..EEEEE-S CS
               B3  91 elvvkvfrk 99 
                      +l ++++r+
  Medtr7g073240.1 214 KLIIGFRRA 222
                      889999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-27119222IPR015300DNA-binding pseudobarrel domain
CDDcd100176.56E-21120221No hitNo description
SuperFamilySSF1019361.7E-20120221IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.825122223IPR003340B3 DNA binding domain
PfamPF023627.1E-16122222IPR003340B3 DNA binding domain
SMARTSM010191.7E-14122223IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MKVREIYESL ARTNLSMTLN TPFGNSNSFG GGEKQQQTEN SIPNLSEAQP KSQNLLHKLP  60
KSTLATESEK NVCLASPIHH VARKSPVRRQ RKHISARNLP KITDQELQQL SGDLNSAVVP  120
LFEKTLTASD VGRLGRMVLP KSCVETYFPP ISEPGGVYLQ IEDVKGKKLV FKFRFWPNNS  180
SRIYVLEGVH AWIQSMQLQV GDFVTFNRMD PGEKLIIGFR RASVSSIQVN NIAMSKGMKR  240
KRLCLPQELV VPKKKRTCDI ESKRNKSLLI DNQETLMLKL TWEEAQDFLH PPPTVNSNIV  300
VIEDHVFEEY EEPPIIAKKG IFINGMKEQW IQCDKCSEWR KLESVENLWG QRRCSCSAPM  360
N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C4e-551002231124B3 domain-containing transcription repressor VAL1
5yzz_C4e-551002231124B3 domain-containing transcription repressor VAL1
5z00_C4e-551002231124B3 domain-containing transcription repressor VAL1
5z00_G4e-551002231124B3 domain-containing transcription repressor VAL1
5z00_K4e-551002231124B3 domain-containing transcription repressor VAL1
5z00_M4e-551002231124B3 domain-containing transcription repressor VAL1
6j9a_A4e-551002232125B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239255RKRLCLPQELVVPKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g073240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1467840.0AC146784.30 Medicago truncatula clone mth2-172c4, complete sequence.
GenBankAC1955690.0AC195569.4 Medicago truncatula chromosome 7 BAC clone mth2-61d24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012569053.11e-145B3 domain-containing transcription repressor VAL2-like
TrEMBLG7KY510.0G7KY51_MEDTR; B3 domain transcription repressor VAL2
STRINGAES798390.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3073822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.14e-90HSI2-like 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]