PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g070140.1 | ||||||||
Common Name | MTR_7g070140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NAC | ||||||||
Protein Properties | Length: 138aa MW: 15558.4 Da PI: 8.6658 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 93.6 | 3.2e-29 | 16 | 91 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 e+e yfFs+++ ky++g+r++r+t+sgyWkat dk++++ ++e+vg+kktLvfy+g+ p+g++tdW+m+eyrl Medtr7g070140.1 16 MEQERYFFSTKEAKYSNGNRSKRVTNSGYWKATSLDKQIMNLkTREVVGMKKTLVFYRGKPPHGSRTDWIMQEYRL 91 46799***********************************9757788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 29.931 | 1 | 114 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.22E-29 | 17 | 98 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-13 | 20 | 91 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MSCGLISVCV VLLGDMEQER YFFSTKEAKY SNGNRSKRVT NSGYWKATSL DKQIMNLKTR 60 EVVGMKKTLV FYRGKPPHGS RTDWIMQEYR LNSSHSNPLK KNNIDASSSS ITDELDEHEN 120 EDSSNSLPSS FGNVFYA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-22 | 17 | 91 | 70 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-22 | 17 | 91 | 70 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-22 | 17 | 91 | 70 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-22 | 17 | 91 | 70 | 142 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-22 | 17 | 91 | 70 | 142 | NAC domain-containing protein 19 |
4dul_B | 2e-22 | 17 | 91 | 70 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.7067 | 1e-102 | glandular trichome| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g070140.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT967319 | 1e-165 | CT967319.2 M.truncatula DNA sequence from clone MTH2-59J17 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003620957.1 | 2e-50 | NAC domain-containing protein 83 | ||||
Swissprot | Q9FY93 | 1e-37 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | G7KT94 | 3e-98 | G7KT94_MEDTR; NAC transcription factor-like protein | ||||
STRING | AES79595 | 5e-99 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 5e-40 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g070140.1 |
Entrez Gene | 11412156 |
Publications ? help Back to Top | |||
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