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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g069590.1 | ||||||||
Common Name | MTR_7g069590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 154aa MW: 17516.1 Da PI: 9.1192 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.7 | 1.3e-10 | 41 | 81 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri ++f L++++P Kl+ +++Le+A++Y+k L Medtr7g069590.1 41 ARERRHRISDRFKILQSMIPGG-----SKLDTVSMLEEAIHYVKFL 81 699*****************95.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.116 | 32 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.13E-13 | 37 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.4E-12 | 38 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-12 | 38 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.78E-13 | 38 | 85 | No hit | No description |
Pfam | PF00010 | 5.5E-8 | 41 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MECNTISYSY GSCSKRKEKK GVKKSKGSSV KLSTDPQSVA ARERRHRISD RFKILQSMIP 60 GGSKLDTVSM LEEAIHYVKF LKKQIWLHET LINFVDDIGE SHMLLPQDYS SNDKNIPSGT 120 FESMQNLPQL PLEQFCFQGD KDIKTIFDAT MKY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g069590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT967302 | 0.0 | CT967302.9 M.truncatula DNA sequence from clone MTH2-146M13 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003623323.1 | 1e-112 | transcription factor LAX PANICLE 1 | ||||
Swissprot | Q9M041 | 4e-31 | BH140_ARATH; Transcription factor bHLH140 | ||||
TrEMBL | G7KSC0 | 1e-110 | G7KSC0_MEDTR; Helix loop helix DNA-binding domain protein | ||||
STRING | AES79541 | 1e-111 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7167 | 28 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01310.1 | 1e-30 | APRATAXIN-like |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g069590.1 |
Entrez Gene | 11412129 |
Publications ? help Back to Top | |||
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