PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g062220.1
Common NameMTR_7g062220
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 318aa    MW: 35644.6 Da    PI: 6.4367
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g062220.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1023.5e-32124180258
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                      dDgy+WrKYGqK++k+s++prsYYrCt ++C +kk+vers+edp++++itYeg H h
  Medtr7g062220.1 124 DDGYRWRKYGQKSIKNSPNPRSYYRCTNPRCGAKKQVERSNEDPDTLIITYEGLHLH 180
                      8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.68118183IPR003657WRKY domain
SuperFamilySSF1182909.55E-27122180IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-29122180IPR003657WRKY domain
SMARTSM007748.3E-36123182IPR003657WRKY domain
PfamPF031063.5E-26124180IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MIDSSMSKTM MEKIMSSNWS ENDELLRELL VDESPLLMLP HERVSEVANL SHDSSKDQAF  60
NRFISNIYSG PTISDIENAL LVTNHSNQFQ QISSTRVSIL ERSLSKIENK YTLKIKCFGN  120
GLGDDGYRWR KYGQKSIKNS PNPRSYYRCT NPRCGAKKQV ERSNEDPDTL IITYEGLHLH  180
FAYPYFIVGQ SHQSQSHPPM KKSKATSSQG PTQEHKASEV HEGQNIQEVH ETQSRTSLGL  240
ISSVLLDRTQ DTVQENFGSE GLLEDMVPFM VRNPTNNVDG DDYSKFSFSS HLSPPASWTS  300
GFSTSTSCYA VGLNPSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-211221801674Probable WRKY transcription factor 4
2lex_A2e-211221801674Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g062220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013448880.10.0probable WRKY transcription factor 49
TrEMBLA0A072TZR70.0A0A072TZR7_MEDTR; Putative transcription factor WRKY family
STRINGXP_004514387.11e-151(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71183449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.14e-54WRKY DNA-binding protein 49
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]