PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g061840.1
Common NameMTR_7g061840
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 612aa    MW: 68607.8 Da    PI: 9.1696
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g061840.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.5e-08519568147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ + ++     k+Rt  ++k++w ++
  Medtr7g061840.1 519 RRPFSVLEVEALVQAVEKLGTGRWRDVKQRAFdhaKHRTYVDLKDKWKTL 568
                      567888999**********************99**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.95E-6325406IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.75514573IPR017930Myb domain
SMARTSM007171.6E-7518571IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-10519569IPR009057Homeodomain-like
CDDcd116601.25E-16520570No hitNo description
SuperFamilySSF466891.22E-15520601IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MIMQKRLDYS FNGYQVPRAS RSPRGRGTVR KRPDSNRIQA FDILASVAGN LLQKNQSSIP  60
DNAASAKDPL AVFGINIKEN KQENQVGSFK EEQFENGTCS EVVSGCVPSL QGKHENQRVA  120
GDSSFHDNHL EGQGQNVIER EDERVKLRST NEKTIRIKNR SDGLIEPSQR ASRDCSAENH  180
VEKPSLEGHF RRNLDSLPNG SGTRKLLNRD DDENFVRSTE LNSKNKIPDP PTDTIKVKDA  240
SPFVNDENNS GDNSVLENSE MMYPFKKRKF FYQTSSSTSD SWSHCQGTVD SSCTRVNGTN  300
HGTGGTMHVI EESSSIADEE VHPESKGCNV KLSIKSFKVP ELFIDIPETA TIGSLKRTVM  360
EAVTTILGDE LHVGILLQGK KIRDDSKTLI QTGISQDDKR HRLGFMLEPR HNRISSSYNE  420
DPCFLTTGSQ PKLSRQSTSL MLQQGTYNVS RERSTVKIEN CAEGDLNMVS SLGEASANNN  480
NMSKCRALVT VPAINMDALA VVPYRRKSGN SYFGQRRIRR PFSVLEVEAL VQAVEKLGTG  540
RWRDVKQRAF DHAKHRTYVD LKDKWKTLVH TARISPQQRR GEPVPQELLD RVLSAHAYWS  600
QQQCKHQFKS M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-525036111109Telomere binding protein TBP1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g061840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013448864.10.0telomere repeat-binding protein 5 isoform X1
RefseqXP_024625720.10.0telomere repeat-binding protein 5 isoform X1
RefseqXP_024625721.10.0telomere repeat-binding protein 5 isoform X1
SwissprotQ6R0E32e-98TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A072U0H70.0A0A072U0H7_MEDTR; Double-strand telomere-binding protein, putative
STRINGXP_004492361.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131882124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.18e-90TRF-like 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]