PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g050720.1 | ||||||||
Common Name | MTR_7g050720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 321aa MW: 36767.5 Da PI: 10.0347 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 66.3 | 4.5e-21 | 17 | 102 | 9 | 100 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100 +l +g l++p+kf+e++g + s + l++++g +W+++l k++g+++++kGWkeFvk + L +g ++Fk+ ++s f +v++f+ks Medtr7g050720.1 17 QSLHQGKLIIPRKFVEKYG--EGLSNAIYLKTPNGAKWKLNL--VKSDGKIWFEKGWKEFVKYHSLSQGHLLLFKYGRTSHF--HVHIFDKS 102 4566778***********8..458899***************..********************************888999..*****985 PP | |||||||
2 | B3 | 56.8 | 4e-18 | 212 | 315 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE.....EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy...rkksgr....yvltkGWkeFvkangLkegDfvvFkld 85 f+ v+ ps+ + ++l +p +f ++h g+ k+++ ++ l+ ++g++W ++ + ++ + + ++ Wk F+++n+Lk+gD+++F+l Medtr7g050720.1 212 FIAVMHPSYIDAACNLHIPSEFGKRHllGLGKKKG-DIHLRLLNGKVWPARYLIrkgNR---KgekfEMYSSEWKTFAEDNNLKVGDVCTFELF 301 788999**********************5555454.89999999********7755533...3344678889********************98 PP SS.SEE..EEEEE- CS B3 86 gr.sefelvvkvfr 98 + + ++ v++fr Medtr7g050720.1 302 PTsTILTFIVHIFR 315 66688889999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.3E-26 | 7 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-26 | 7 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.73E-20 | 9 | 100 | No hit | No description |
PROSITE profile | PS50863 | 14.945 | 9 | 102 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-21 | 10 | 102 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-18 | 17 | 101 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-21 | 204 | 317 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.87E-22 | 206 | 316 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.22E-22 | 210 | 315 | No hit | No description |
Pfam | PF02362 | 1.6E-16 | 212 | 316 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-15 | 212 | 317 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.872 | 212 | 317 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MANEFPPTHF FKIICDQSLH QGKLIIPRKF VEKYGEGLSN AIYLKTPNGA KWKLNLVKSD 60 GKIWFEKGWK EFVKYHSLSQ GHLLLFKYGR TSHFHVHIFD KSALEIKYPS QRVESKRVSN 120 DLGNKPQNDE DLEDYIASKK RKTNLSFEFN QPYEIGSNSC VNVGKLEKVA ALNHIDKKCK 180 GCLNFAGKQL AIAKKVTTFD RANSMRTCNP SFIAVMHPSY IDAACNLHIP SEFGKRHLLG 240 LGKKKGDIHL RLLNGKVWPA RYLIRKGNRK GEKFEMYSSE WKTFAEDNNL KVGDVCTFEL 300 FPTSTILTFI VHIFRDSFEI * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g050720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC151521 | 0.0 | AC151521.2 Medicago truncatula chromosome 7 clone mte1-49d11, complete sequence. | |||
GenBank | AC169180 | 0.0 | AC169180.3 Medicago truncatula chromosome 7 BAC clone mth2-5f24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003622663.1 | 1e-117 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | G7KVW7 | 0.0 | G7KVW7_MEDTR; Transcriptional factor B3 family protein | ||||
STRING | AES78894 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-35 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g050720.1 |
Entrez Gene | 11439036 |
Publications ? help Back to Top | |||
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