PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g050720.1
Common NameMTR_7g050720
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 321aa    MW: 36767.5 Da    PI: 10.0347
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g050720.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.34.5e-21171029100
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                       +l +g l++p+kf+e++g  +  s  + l++++g +W+++l   k++g+++++kGWkeFvk + L +g  ++Fk+ ++s f  +v++f+ks
  Medtr7g050720.1  17 QSLHQGKLIIPRKFVEKYG--EGLSNAIYLKTPNGAKWKLNL--VKSDGKIWFEKGWKEFVKYHSLSQGHLLLFKYGRTSHF--HVHIFDKS 102
                      4566778***********8..458899***************..********************************888999..*****985 PP
2B356.84e-18212315198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE.....EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy...rkksgr....yvltkGWkeFvkangLkegDfvvFkld 85 
                      f+ v+ ps+  + ++l +p +f ++h  g+ k+++ ++ l+ ++g++W  ++ +   ++   +     + ++ Wk F+++n+Lk+gD+++F+l 
  Medtr7g050720.1 212 FIAVMHPSYIDAACNLHIPSEFGKRHllGLGKKKG-DIHLRLLNGKVWPARYLIrkgNR---KgekfEMYSSEWKTFAEDNNLKVGDVCTFELF 301
                      788999**********************5555454.89999999********7755533...3344678889********************98 PP

                      SS.SEE..EEEEE- CS
               B3  86 gr.sefelvvkvfr 98 
                       + +  ++ v++fr
  Medtr7g050720.1 302 PTsTILTFIVHIFR 315
                      66688889999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.3E-267102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-267102IPR015300DNA-binding pseudobarrel domain
CDDcd100172.73E-209100No hitNo description
PROSITE profilePS5086314.9459102IPR003340B3 DNA binding domain
SMARTSM010192.3E-2110102IPR003340B3 DNA binding domain
PfamPF023621.9E-1817101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-21204317IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-22206316IPR015300DNA-binding pseudobarrel domain
CDDcd100173.22E-22210315No hitNo description
PfamPF023621.6E-16212316IPR003340B3 DNA binding domain
SMARTSM010191.3E-15212317IPR003340B3 DNA binding domain
PROSITE profilePS5086312.872212317IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MANEFPPTHF FKIICDQSLH QGKLIIPRKF VEKYGEGLSN AIYLKTPNGA KWKLNLVKSD  60
GKIWFEKGWK EFVKYHSLSQ GHLLLFKYGR TSHFHVHIFD KSALEIKYPS QRVESKRVSN  120
DLGNKPQNDE DLEDYIASKK RKTNLSFEFN QPYEIGSNSC VNVGKLEKVA ALNHIDKKCK  180
GCLNFAGKQL AIAKKVTTFD RANSMRTCNP SFIAVMHPSY IDAACNLHIP SEFGKRHLLG  240
LGKKKGDIHL RLLNGKVWPA RYLIRKGNRK GEKFEMYSSE WKTFAEDNNL KVGDVCTFEL  300
FPTSTILTFI VHIFRDSFEI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g050720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1515210.0AC151521.2 Medicago truncatula chromosome 7 clone mte1-49d11, complete sequence.
GenBankAC1691800.0AC169180.3 Medicago truncatula chromosome 7 BAC clone mth2-5f24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003622663.11e-117B3 domain-containing transcription factor VRN1
TrEMBLG7KVW70.0G7KVW7_MEDTR; Transcriptional factor B3 family protein
STRINGAES788940.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-35B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]