PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g050580.1
Common NameMTR_7g050580
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 316aa    MW: 36083.5 Da    PI: 10.4093
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g050580.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3612e-1914104299
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      fk+ + + +l +g l++p+kf+e++g++   +k+  l++++g +W+++l   k++g+++++kGWk+F++ + L  g  ++F+++++s+f   v+
  Medtr7g050580.1  14 FKIIL-AQNLHEGKLMMPRKFVEKYGKS--LPKETCLKTPNGGKWKLNL--VKSDGKIWFEKGWKQFAEHHSLAHGHLLLFRYEKTSNF--EVH 100
                      55554.45566677***********955..999****************..********************************998999..999 PP

                      EE-S CS
               B3  96 vfrk 99 
                      +f+k
  Medtr7g050580.1 101 IFEK 104
                      9987 PP
2B3612.1e-19191291199
                      EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      f+ v+  s+v  + ++ +p+kf ++h +++k+++ ++ ++ ++  +W  ++++rk++ +  + +t+GWk F+++n+Lk+gD++ F+l++ +  +
  Medtr7g050580.1 191 FVVVMRASYVEHKFLMNIPRKFGNRHfDLDKKRG-DIHFQVLNEGVWPTRFSIRKSRTGlqFEITGGWKAFAEDNKLKVGDVCKFELISCTILT 283
                      788999********************97777665.9***************99999998889999**********************9778888 PP

                      .EEEEE-S CS
               B3  92 lvvkvfrk 99 
                      + v++fr+
  Medtr7g050580.1 284 FIVHIFRE 291
                      99999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.24E-259105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.9E-269105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.35312105IPR003340B3 DNA binding domain
CDDcd100177.19E-1812102No hitNo description
SMARTSM010193.5E-1913105IPR003340B3 DNA binding domain
PfamPF023621.2E-1614104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-23179297IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-23188293IPR015300DNA-binding pseudobarrel domain
CDDcd100177.19E-23189290No hitNo description
PfamPF023622.4E-18191291IPR003340B3 DNA binding domain
PROSITE profilePS5086312.449191292IPR003340B3 DNA binding domain
SMARTSM010191.9E-17191292IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MASEIPEVRP THFFKIILAQ NLHEGKLMMP RKFVEKYGKS LPKETCLKTP NGGKWKLNLV  60
KSDGKIWFEK GWKQFAEHHS LAHGHLLLFR YEKTSNFEVH IFEKSALETN YPSKRVEAKT  120
ISNDQGNESL NGENCRAAQK RKANSFEFGS SSCVKVGKSQ KKSKGKQVIT AAEKVTTLER  180
AKSFKIRNPS FVVVMRASYV EHKFLMNIPR KFGNRHFDLD KKRGDIHFQV LNEGVWPTRF  240
SIRKSRTGLQ FEITGGWKAF AEDNKLKVGD VCKFELISCT ILTFIVHIFR ETDNDNTNCS  300
ASQKFSQVKE EASQG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g050580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1691800.0AC169180.3 Medicago truncatula chromosome 7 BAC clone mth2-5f24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024626636.10.0B3 domain-containing transcription factor VRN1
TrEMBLG7KVV60.0G7KVV6_MEDTR; Plant-specific B3-DNA-binding domain protein
STRINGAES788830.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.14e-25B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]